Definition Helicobacter pylori HPAG1 chromosome, complete genome.
Accession NC_008086
Length 1,596,366

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The map label for this gene is 108562849

Identifier: 108562849

GI number: 108562849

Start: 431906

End: 433156

Strand: Direct

Name: 108562849

Synonym: HPAG1_0424

Alternate gene names: NA

Gene position: 431906-433156 (Clockwise)

Preceding gene: 108562844

Following gene: 108562875

Centisome position: 27.06

GC content: 40.21

Gene sequence:

>1251_bases
ATGCAATATAAGAAAAATAAGAAAAGATATTATTATTTAGCGTTAGGGATCCTTTTTTTAAATGGTCTGTCTTTGAAAGC
TTTAGAAATTGCAGTCAAACCTTTTGGCTATCTGGGGCTATTGTATAATCAAGGGGTGCAAAAAAACCCTCACAGCTATG
TGGGGGCTTTAGCACGTCTTGGGGTGGATTTTTCTTATAGCAATGGGTGGTCCTTTGGTATTGGAGCGATTGGGGCTTGG
AATATTTATAACAAACAGCGTTTGGCTAACCTTTACATCAGTCTGGGGAATTTTTTTGGTAACCCTAACAATGTTAAACC
TTATTTGAGCGCTGGCGATGTTTCAGATGCGTATCTTCAATACACTAACCAGCGTTTTAAAATCGCTTTAGGGCGTTTCA
ATACCGATTTTGTGGATTTTGATTGGATAGGGGGCAATATTCAAGGGGTTTCTGTAGCTTTTAAGCAAAATTCCATGCGT
TATTTTGGGATTTTTATGGATAGCATGCTTTATAATGGGCATCAAATCAACAAAGAGCAAGGGAATCGGATCGCTACTTC
CCTAAACGCTCTAGCGTCTTATGACCCTGTGTCTAAACGCTTGTATGTGGGGGGGGAAGTGTTTGTTTTAGGCGCAGAAT
ACAAGCATGAAAATCTTAAAGTGGTGCCTTTTATTTTAACGGACACCCGCTTGCCTTTGCCCACTCAAAATGTTTTAGTG
CAAGTGGGGGGTAAGTTGGAGTATGACGCTTCTTTAGCTAAGGGTTTCACTTCGCGCACTCTAGTGCATGGCATGTATCA
ATACGGCAACACTGATGCGACTACAAGCACTAAAAATGCCGGCTTGTTTTTGATCGATCAAACTTTTAAATACAAAATTT
TTAATTTTGGAACGGGTTTTTATATCGTTCCGGCAAGAAACAATAAGGGCTATCTATGGACTTTTAATGACAGGACCAAA
TTCTATGGCCGCGGGATCAACGCGCCCGGCGTGCCAGCGATTTATTTTGCAAACTCCAGCATTTCAGGCTATGTTTTTTT
AGGGCTTAAGACTAAAAGGGTGCGTTTAGACGCGATGGTGGCTTTTGGGGATTACCAAGAATATTCTTTAATGAGCAGTT
TTAGGGTTTGGACTTATAGGAGTTTGTCTTTTGATATGGGTGGGGGGTATGTGTATGCTTACAATTCTAAAGCCACGAGA
AAAAGTCTTGGGAATAGTTCTTTTGTCTTTTTTGGGAAGTTTTTGTTTTAA

Upstream 100 bases:

>100_bases
TTGATAATGCTTTTAGGTGATGGAGATTTTAAACCCGTTTCAGCGCAATTAAAAGGAATTTTAACTAAAATATTGAGTTT
AAATCCACGATGAGTTTTTA

Downstream 100 bases:

>100_bases
AAATGTTTTAAAAACTTCTTTTAAAATCAGGTCTTTGGGGTTTTTTAGGGAAAAAAGTTTTTTTGAACTCAGGTTCCCAT
AGTTTGATCACGCCATGGTG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 416; Mature: 416

Protein sequence:

>416_residues
MQYKKNKKRYYYLALGILFLNGLSLKALEIAVKPFGYLGLLYNQGVQKNPHSYVGALARLGVDFSYSNGWSFGIGAIGAW
NIYNKQRLANLYISLGNFFGNPNNVKPYLSAGDVSDAYLQYTNQRFKIALGRFNTDFVDFDWIGGNIQGVSVAFKQNSMR
YFGIFMDSMLYNGHQINKEQGNRIATSLNALASYDPVSKRLYVGGEVFVLGAEYKHENLKVVPFILTDTRLPLPTQNVLV
QVGGKLEYDASLAKGFTSRTLVHGMYQYGNTDATTSTKNAGLFLIDQTFKYKIFNFGTGFYIVPARNNKGYLWTFNDRTK
FYGRGINAPGVPAIYFANSSISGYVFLGLKTKRVRLDAMVAFGDYQEYSLMSSFRVWTYRSLSFDMGGGYVYAYNSKATR
KSLGNSSFVFFGKFLF

Sequences:

>Translated_416_residues
MQYKKNKKRYYYLALGILFLNGLSLKALEIAVKPFGYLGLLYNQGVQKNPHSYVGALARLGVDFSYSNGWSFGIGAIGAW
NIYNKQRLANLYISLGNFFGNPNNVKPYLSAGDVSDAYLQYTNQRFKIALGRFNTDFVDFDWIGGNIQGVSVAFKQNSMR
YFGIFMDSMLYNGHQINKEQGNRIATSLNALASYDPVSKRLYVGGEVFVLGAEYKHENLKVVPFILTDTRLPLPTQNVLV
QVGGKLEYDASLAKGFTSRTLVHGMYQYGNTDATTSTKNAGLFLIDQTFKYKIFNFGTGFYIVPARNNKGYLWTFNDRTK
FYGRGINAPGVPAIYFANSSISGYVFLGLKTKRVRLDAMVAFGDYQEYSLMSSFRVWTYRSLSFDMGGGYVYAYNSKATR
KSLGNSSFVFFGKFLF
>Mature_416_residues
MQYKKNKKRYYYLALGILFLNGLSLKALEIAVKPFGYLGLLYNQGVQKNPHSYVGALARLGVDFSYSNGWSFGIGAIGAW
NIYNKQRLANLYISLGNFFGNPNNVKPYLSAGDVSDAYLQYTNQRFKIALGRFNTDFVDFDWIGGNIQGVSVAFKQNSMR
YFGIFMDSMLYNGHQINKEQGNRIATSLNALASYDPVSKRLYVGGEVFVLGAEYKHENLKVVPFILTDTRLPLPTQNVLV
QVGGKLEYDASLAKGFTSRTLVHGMYQYGNTDATTSTKNAGLFLIDQTFKYKIFNFGTGFYIVPARNNKGYLWTFNDRTK
FYGRGINAPGVPAIYFANSSISGYVFLGLKTKRVRLDAMVAFGDYQEYSLMSSFRVWTYRSLSFDMGGGYVYAYNSKATR
KSLGNSSFVFFGKFLF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 46861; Mature: 46861

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQYKKNKKRYYYLALGILFLNGLSLKALEIAVKPFGYLGLLYNQGVQKNPHSYVGALARL
CCCCCCCCEEEEEEEEEHHHCCCCEEEEEEEECCCCEEEEHCCCCCCCCCHHHHHHHHHH
GVDFSYSNGWSFGIGAIGAWNIYNKQRLANLYISLGNFFGNPNNVKPYLSAGDVSDAYLQ
CCEEECCCCCEECCCCEEEECCCCHHHHHHHEEEEHHHCCCCCCCCCEEECCCCCHHHHH
YTNQRFKIALGRFNTDFVDFDWIGGNIQGVSVAFKQNSMRYFGIFMDSMLYNGHQINKEQ
CCCCEEEEEEECCCCCEEEEEEECCCEEEEEEEEECCCEEEEEEEHHHHHCCCEEECHHC
GNRIATSLNALASYDPVSKRLYVGGEVFVLGAEYKHENLKVVPFILTDTRLPLPTQNVLV
CCCHHHHHHHHHCCCCCCCEEEECCEEEEEECCCCCCCEEEEEEEEECCCCCCCCCCEEE
QVGGKLEYDASLAKGFTSRTLVHGMYQYGNTDATTSTKNAGLFLIDQTFKYKIFNFGTGF
EECCCEEECCHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCEEEEEEEECCCE
YIVPARNNKGYLWTFNDRTKFYGRGINAPGVPAIYFANSSISGYVFLGLKTKRVRLDAMV
EEEEEECCCCEEEEECCCCEEEECCCCCCCCCEEEEECCCCCEEEEEEEEEEEEEEEEEE
AFGDYQEYSLMSSFRVWTYRSLSFDMGGGYVYAYNSKATRKSLGNSSFVFFGKFLF
EECCCHHHHHHHHEEEEEEEEEEEECCCCEEEEECCCHHHHHCCCCCEEEEEEECC
>Mature Secondary Structure
MQYKKNKKRYYYLALGILFLNGLSLKALEIAVKPFGYLGLLYNQGVQKNPHSYVGALARL
CCCCCCCCEEEEEEEEEHHHCCCCEEEEEEEECCCCEEEEHCCCCCCCCCHHHHHHHHHH
GVDFSYSNGWSFGIGAIGAWNIYNKQRLANLYISLGNFFGNPNNVKPYLSAGDVSDAYLQ
CCEEECCCCCEECCCCEEEECCCCHHHHHHHEEEEHHHCCCCCCCCCEEECCCCCHHHHH
YTNQRFKIALGRFNTDFVDFDWIGGNIQGVSVAFKQNSMRYFGIFMDSMLYNGHQINKEQ
CCCCEEEEEEECCCCCEEEEEEECCCEEEEEEEEECCCEEEEEEEHHHHHCCCEEECHHC
GNRIATSLNALASYDPVSKRLYVGGEVFVLGAEYKHENLKVVPFILTDTRLPLPTQNVLV
CCCHHHHHHHHHCCCCCCCEEEECCEEEEEECCCCCCCEEEEEEEEECCCCCCCCCCEEE
QVGGKLEYDASLAKGFTSRTLVHGMYQYGNTDATTSTKNAGLFLIDQTFKYKIFNFGTGF
EECCCEEECCHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCEEEEEEEECCCE
YIVPARNNKGYLWTFNDRTKFYGRGINAPGVPAIYFANSSISGYVFLGLKTKRVRLDAMV
EEEEEECCCCEEEEECCCCEEEECCCCCCCCCEEEEECCCCCEEEEEEEEEEEEEEEEEE
AFGDYQEYSLMSSFRVWTYRSLSFDMGGGYVYAYNSKATRKSLGNSSFVFFGKFLF
EECCCHHHHHHHHEEEEEEEEEEEECCCCEEEEECCCHHHHHCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA