Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
---|---|
Accession | NC_008086 |
Length | 1,596,366 |
Click here to switch to the map view.
The map label for this gene is 108562776
Identifier: 108562776
GI number: 108562776
Start: 362289
End: 362978
Strand: Direct
Name: 108562776
Synonym: HPAG1_0351
Alternate gene names: NA
Gene position: 362289-362978 (Clockwise)
Preceding gene: 108562775
Following gene: 108562777
Centisome position: 22.69
GC content: 34.93
Gene sequence:
>690_bases ATGGCAAAACATAAGAACTATGAAATTTTAAATCTCATAGGCTATGCTTTGGCAAAATTTGATAATGATTTTATTAAAGA ATTTGGCTTTTCTACTAAAAATGCTTTTTTTGAATATTGCGTCCAAATCGGCCTAGCTGAAACGACTGGCGTTATCAAAA ATCGCATGGATTTATTTGATTATTTTTTTCCTAATAAACGCAAAGGCTGGTGGCAAAAAGGCGATGCCTATATCCATAGA AAATTATGGATTGATAGCTTATTTAAAGATGAAGACGCTAAAGGTTTTGGCCATATTGTGAAATGGTTTTTGCAAGAACA ATACGGAATCAAAGATTTAGGCATTACCCCTAACGCTTACCTTAAAACCCGCTATAAAAGCATGCAAGAAACAGGTTTAG AAGCCGAATTGTATTTTTTAAACCACTATAAAAACATCAAAACATTCTCTTGTGAGCATTTAAAAGACATGCGTCTTTTT GGCGATGGGTATGACTTCTATATTCAAACCAACAAGCAAGCGTTTTTAGTGGGAGTTAAGGGGATTAGAGAAAAGCAAGG GGCATTGAGATTGACCCAAAAAGAATACGAACAAGCGCAAACTTATAGCCATGATTATGCGCTTGTAGTGGTATTGAATT TGAGTGAAAAACCCCATCTTTTATCCATTGCTAACCCCTTAAGCATTTAG
Upstream 100 bases:
>100_bases AAAAAGAGGGCAAGAAGCGCATGAAAGCTATCGGTAAGGTGGAGCTTCCCCAAGAAGCGTTTTTAGCGATATTAAAGATC GATTAGGGCGTTTAGCTTCT
Downstream 100 bases:
>100_bases AATTTAAGGCATGCGAGAGGAAGCAAAAAAGCATTTTAGAATACCATTTAATAGGGCAAATAAAATAACTTTGAATTTTA CAGGGGGCTACAGGAGTGGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 229; Mature: 228
Protein sequence:
>229_residues MAKHKNYEILNLIGYALAKFDNDFIKEFGFSTKNAFFEYCVQIGLAETTGVIKNRMDLFDYFFPNKRKGWWQKGDAYIHR KLWIDSLFKDEDAKGFGHIVKWFLQEQYGIKDLGITPNAYLKTRYKSMQETGLEAELYFLNHYKNIKTFSCEHLKDMRLF GDGYDFYIQTNKQAFLVGVKGIREKQGALRLTQKEYEQAQTYSHDYALVVVLNLSEKPHLLSIANPLSI
Sequences:
>Translated_229_residues MAKHKNYEILNLIGYALAKFDNDFIKEFGFSTKNAFFEYCVQIGLAETTGVIKNRMDLFDYFFPNKRKGWWQKGDAYIHR KLWIDSLFKDEDAKGFGHIVKWFLQEQYGIKDLGITPNAYLKTRYKSMQETGLEAELYFLNHYKNIKTFSCEHLKDMRLF GDGYDFYIQTNKQAFLVGVKGIREKQGALRLTQKEYEQAQTYSHDYALVVVLNLSEKPHLLSIANPLSI >Mature_228_residues AKHKNYEILNLIGYALAKFDNDFIKEFGFSTKNAFFEYCVQIGLAETTGVIKNRMDLFDYFFPNKRKGWWQKGDAYIHRK LWIDSLFKDEDAKGFGHIVKWFLQEQYGIKDLGITPNAYLKTRYKSMQETGLEAELYFLNHYKNIKTFSCEHLKDMRLFG DGYDFYIQTNKQAFLVGVKGIREKQGALRLTQKEYEQAQTYSHDYALVVVLNLSEKPHLLSIANPLSI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26866; Mature: 26735
Theoretical pI: Translated: 9.07; Mature: 9.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKHKNYEILNLIGYALAKFDNDFIKEFGFSTKNAFFEYCVQIGLAETTGVIKNRMDLFD CCCCCCCHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHH YFFPNKRKGWWQKGDAYIHRKLWIDSLFKDEDAKGFGHIVKWFLQEQYGIKDLGITPNAY HHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEECCCCCCHH LKTRYKSMQETGLEAELYFLNHYKNIKTFSCEHLKDMRLFGDGYDFYIQTNKQAFLVGVK HHHHHHHHHHCCCCEEEEEEECCCCCCEECHHHHHHHHEECCCEEEEEEECCEEEEEECC GIREKQGALRLTQKEYEQAQTYSHDYALVVVLNLSEKPHLLSIANPLSI CHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEECCCCCCC >Mature Secondary Structure AKHKNYEILNLIGYALAKFDNDFIKEFGFSTKNAFFEYCVQIGLAETTGVIKNRMDLFD CCCCCCHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHH YFFPNKRKGWWQKGDAYIHRKLWIDSLFKDEDAKGFGHIVKWFLQEQYGIKDLGITPNAY HHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEECCCCCCHH LKTRYKSMQETGLEAELYFLNHYKNIKTFSCEHLKDMRLFGDGYDFYIQTNKQAFLVGVK HHHHHHHHHHCCCCEEEEEEECCCCCCEECHHHHHHHHEECCCEEEEEEECCEEEEEECC GIREKQGALRLTQKEYEQAQTYSHDYALVVVLNLSEKPHLLSIANPLSI CHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA