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The map label for this gene is yqgF [C]

Identifier: 108562763

GI number: 108562763

Start: 347806

End: 348210

Strand: Direct

Name: yqgF [C]

Synonym: HPAG1_0338

Alternate gene names: 108562763

Gene position: 347806-348210 (Clockwise)

Preceding gene: 108562762

Following gene: 108562764

Centisome position: 21.79

GC content: 41.98

Gene sequence:

>405_bases
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGCATCGCTGCGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCAAAATAGGAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAGGTGCTAGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGATACGAACGCACGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGATAATTCTAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGTGGCT
CGCTATTAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGCAGGATCTTGGAACGCTATTGCCAGCAGGTTTTAAAAAATC
ATTAG

Upstream 100 bases:

>100_bases
ACCCTAGCTATGAAGAGGCGTATCTCAAATTTGGGGATAAGCTTTTAGAATACGAGCTGTTGGGTAAGATCAAGCGCATC
AATCATCTCGTGGTGTTAGC

Downstream 100 bases:

>100_bases
ATCTGATTGCAATTTGATTATAATAAAGTCTAAATTTTTTAATAAAGGGAGAAGTGTCATGCTAGAAAATTTCAAAAAAG
CCATTTTTAGGGCTTTATGC

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MILACDVGLKRIGIAALLNGVILPLEAILRQNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLVDFKGE
IVFINEDNSSIEAYENLEHLGKKNKWLAIKDGRLDSLSACRILERYCQQVLKNH

Sequences:

>Translated_134_residues
MILACDVGLKRIGIAALLNGVILPLEAILRQNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLVDFKGE
IVFINEDNSSIEAYENLEHLGKKNKWLAIKDGRLDSLSACRILERYCQQVLKNH
>Mature_134_residues
MILACDVGLKRIGIAALLNGVILPLEAILRQNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLVDFKGE
IVFINEDNSSIEAYENLEHLGKKNKWLAIKDGRLDSLSACRILERYCQQVLKNH

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination [H]

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337 [H]

Pfam domain/function: PF03652 UPF0081 [H]

EC number: NA

Molecular weight: Translated: 15212; Mature: 15212

Theoretical pI: Translated: 8.07; Mature: 8.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILACDVGLKRIGIAALLNGVILPLEAILRQNRNQASRDLSDLLREKNIQVLVVGKPNES
CEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEECCCCC
YADTNARIEHFIKLVDFKGEIVFINEDNSSIEAYENLEHLGKKNKWLAIKDGRLDSLSAC
CCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHH
RILERYCQQVLKNH
HHHHHHHHHHHHCC
>Mature Secondary Structure
MILACDVGLKRIGIAALLNGVILPLEAILRQNRNQASRDLSDLLREKNIQVLVVGKPNES
CEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEECCCCC
YADTNARIEHFIKLVDFKGEIVFINEDNSSIEAYENLEHLGKKNKWLAIKDGRLDSLSAC
CCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHH
RILERYCQQVLKNH
HHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA