Definition Helicobacter pylori HPAG1 chromosome, complete genome.
Accession NC_008086
Length 1,596,366

Click here to switch to the map view.

The map label for this gene is 108562735

Identifier: 108562735

GI number: 108562735

Start: 322789

End: 323193

Strand: Direct

Name: 108562735

Synonym: HPAG1_0310

Alternate gene names: NA

Gene position: 322789-323193 (Clockwise)

Preceding gene: 108562734

Following gene: 108562736

Centisome position: 20.22

GC content: 36.54

Gene sequence:

>405_bases
ATGTGCCAAATCCAATGCTTGCTTATTTTACTTTTTATTAATATAGTTAGCGCTACCATCGTTTATTTTTTCCAAGCGTT
TCAAGGGGTTTTGAATTTTGAAGGGGGGTTTTTAGGGTTTTTTATCGTGGCGTTGTCTTCGTATTACGGCGTTAAAAAGC
GTTTGGATTTAAGGAAACAAAATTCAATAGAAAAAGAAGAAAAGCAAAAATTCCAAAAATTCGCCCTGGGTTTGGAAATG
TCTTTCAATGTGTGGCGTTTAGGGGGGTATGGGGTTTTACTAGGCATTTTAGGAGCGCTTTTATTCTTGCATCTTTTTAA
CGGGTTAATCTTTCTTATCGGCGTGTTTGTGAGCTCGCTCTCTAGCGCGTTATTACGATTTTTGAATAATAATGGTAAGT
TTTGA

Upstream 100 bases:

>100_bases
TGTCTATAAAGCTTATAAAAACATGCAAAAAGACTATGAAGAACTAGCTAAAGACCCTAAATACACACAAAATAAAACAA
AATAAATGCCATAAAAGCCC

Downstream 100 bases:

>100_bases
CACAAACTCCTATGGATTTTAACCCCTTTAATCCTCTTTTAATTTCTAATCCTATACAATAAAAACAAAAATGGGAGTGG
ATCTTGAAAACAAAAAATCC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MCQIQCLLILLFINIVSATIVYFFQAFQGVLNFEGGFLGFFIVALSSYYGVKKRLDLRKQNSIEKEEKQKFQKFALGLEM
SFNVWRLGGYGVLLGILGALLFLHLFNGLIFLIGVFVSSLSSALLRFLNNNGKF

Sequences:

>Translated_134_residues
MCQIQCLLILLFINIVSATIVYFFQAFQGVLNFEGGFLGFFIVALSSYYGVKKRLDLRKQNSIEKEEKQKFQKFALGLEM
SFNVWRLGGYGVLLGILGALLFLHLFNGLIFLIGVFVSSLSSALLRFLNNNGKF
>Mature_134_residues
MCQIQCLLILLFINIVSATIVYFFQAFQGVLNFEGGFLGFFIVALSSYYGVKKRLDLRKQNSIEKEEKQKFQKFALGLEM
SFNVWRLGGYGVLLGILGALLFLHLFNGLIFLIGVFVSSLSSALLRFLNNNGKF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15148; Mature: 15148

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCQIQCLLILLFINIVSATIVYFFQAFQGVLNFEGGFLGFFIVALSSYYGVKKRLDLRKQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
NSIEKEEKQKFQKFALGLEMSFNVWRLGGYGVLLGILGALLFLHLFNGLIFLIGVFVSSL
CCCCHHHHHHHHHHHHHHHCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SSALLRFLNNNGKF
HHHHHHHHHCCCCC
>Mature Secondary Structure
MCQIQCLLILLFINIVSATIVYFFQAFQGVLNFEGGFLGFFIVALSSYYGVKKRLDLRKQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
NSIEKEEKQKFQKFALGLEMSFNVWRLGGYGVLLGILGALLFLHLFNGLIFLIGVFVSSL
CCCCHHHHHHHHHHHHHHHCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SSALLRFLNNNGKF
HHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA