Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
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Accession | NC_008086 |
Length | 1,596,366 |
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The map label for this gene is 108562735
Identifier: 108562735
GI number: 108562735
Start: 322789
End: 323193
Strand: Direct
Name: 108562735
Synonym: HPAG1_0310
Alternate gene names: NA
Gene position: 322789-323193 (Clockwise)
Preceding gene: 108562734
Following gene: 108562736
Centisome position: 20.22
GC content: 36.54
Gene sequence:
>405_bases ATGTGCCAAATCCAATGCTTGCTTATTTTACTTTTTATTAATATAGTTAGCGCTACCATCGTTTATTTTTTCCAAGCGTT TCAAGGGGTTTTGAATTTTGAAGGGGGGTTTTTAGGGTTTTTTATCGTGGCGTTGTCTTCGTATTACGGCGTTAAAAAGC GTTTGGATTTAAGGAAACAAAATTCAATAGAAAAAGAAGAAAAGCAAAAATTCCAAAAATTCGCCCTGGGTTTGGAAATG TCTTTCAATGTGTGGCGTTTAGGGGGGTATGGGGTTTTACTAGGCATTTTAGGAGCGCTTTTATTCTTGCATCTTTTTAA CGGGTTAATCTTTCTTATCGGCGTGTTTGTGAGCTCGCTCTCTAGCGCGTTATTACGATTTTTGAATAATAATGGTAAGT TTTGA
Upstream 100 bases:
>100_bases TGTCTATAAAGCTTATAAAAACATGCAAAAAGACTATGAAGAACTAGCTAAAGACCCTAAATACACACAAAATAAAACAA AATAAATGCCATAAAAGCCC
Downstream 100 bases:
>100_bases CACAAACTCCTATGGATTTTAACCCCTTTAATCCTCTTTTAATTTCTAATCCTATACAATAAAAACAAAAATGGGAGTGG ATCTTGAAAACAAAAAATCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 134; Mature: 134
Protein sequence:
>134_residues MCQIQCLLILLFINIVSATIVYFFQAFQGVLNFEGGFLGFFIVALSSYYGVKKRLDLRKQNSIEKEEKQKFQKFALGLEM SFNVWRLGGYGVLLGILGALLFLHLFNGLIFLIGVFVSSLSSALLRFLNNNGKF
Sequences:
>Translated_134_residues MCQIQCLLILLFINIVSATIVYFFQAFQGVLNFEGGFLGFFIVALSSYYGVKKRLDLRKQNSIEKEEKQKFQKFALGLEM SFNVWRLGGYGVLLGILGALLFLHLFNGLIFLIGVFVSSLSSALLRFLNNNGKF >Mature_134_residues MCQIQCLLILLFINIVSATIVYFFQAFQGVLNFEGGFLGFFIVALSSYYGVKKRLDLRKQNSIEKEEKQKFQKFALGLEM SFNVWRLGGYGVLLGILGALLFLHLFNGLIFLIGVFVSSLSSALLRFLNNNGKF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15148; Mature: 15148
Theoretical pI: Translated: 10.05; Mature: 10.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCQIQCLLILLFINIVSATIVYFFQAFQGVLNFEGGFLGFFIVALSSYYGVKKRLDLRKQ CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH NSIEKEEKQKFQKFALGLEMSFNVWRLGGYGVLLGILGALLFLHLFNGLIFLIGVFVSSL CCCCHHHHHHHHHHHHHHHCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SSALLRFLNNNGKF HHHHHHHHHCCCCC >Mature Secondary Structure MCQIQCLLILLFINIVSATIVYFFQAFQGVLNFEGGFLGFFIVALSSYYGVKKRLDLRKQ CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH NSIEKEEKQKFQKFALGLEMSFNVWRLGGYGVLLGILGALLFLHLFNGLIFLIGVFVSSL CCCCHHHHHHHHHHHHHHHCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SSALLRFLNNNGKF HHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA