Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
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Accession | NC_008086 |
Length | 1,596,366 |
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The map label for this gene is 108562732
Identifier: 108562732
GI number: 108562732
Start: 320649
End: 321203
Strand: Direct
Name: 108562732
Synonym: HPAG1_0307
Alternate gene names: NA
Gene position: 320649-321203 (Clockwise)
Preceding gene: 108562731
Following gene: 108562733
Centisome position: 20.09
GC content: 38.38
Gene sequence:
>555_bases ATGAAAAAAATGGTTTTGGTATCGGTTTTACTAGCAGGGTTTTTGCAAGCGGTGAATTTGGATTTATCTTCGGCTAAGCT AACATGGACAGCCTTTAAATCTAAGGCTAAAACACCAGTAAATGGGAGTTTTGAAAGCATCACCTATAAATTGGGTAAAT CTCAAGATAGTTTAAAAACCCTTTTAGAGGGAGCGAGCGCGAGTATGGATAGCTTGAAAGTCAATTTGGGCGATGACACT AAAAACAAAAATGTTAAAGAAGCTTTTTTCGCTCTTTTTAAAAATACTAACATCAAAGTAACTTTTAGAAATGTGATAGA AGGCGATCATGCAGGTTCTCTTACGGCTTATGTGAGGATGAATGAAAAGCTGGTAAAAGTGCCTATGCAATACACGATTG CTGAGGATAAGCTCGTGGTTAAAGGGGTCTTGGATCTGTTGAGTTTTGGCTTGAAAAACGAATTAGCGAGCTTGGCTAAA CGATGCGAGAGTTTTCATGAGGGCTTGACTTGGTCGCAAGTGGAAATCCAATTTGAAAGCATGATTAAGGGATAA
Upstream 100 bases:
>100_bases AGTGCAAATGATTATCAAAATGAATCGTTTTAGTTGTAAGCGTGCTTGTTTACACTAAAATAATAAGCGTTATTGATAAG ACCACATTAAAGGATAATGA
Downstream 100 bases:
>100_bases TTTAAAATCATGGAGTTGTTGCACAGCATTAATGATTTTAATGAAGCTAAGCAGGTGATCGCTGGGGGGGTCAATTCACC TGTGAGGGCGTTTAAGAGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 184; Mature: 184
Protein sequence:
>184_residues MKKMVLVSVLLAGFLQAVNLDLSSAKLTWTAFKSKAKTPVNGSFESITYKLGKSQDSLKTLLEGASASMDSLKVNLGDDT KNKNVKEAFFALFKNTNIKVTFRNVIEGDHAGSLTAYVRMNEKLVKVPMQYTIAEDKLVVKGVLDLLSFGLKNELASLAK RCESFHEGLTWSQVEIQFESMIKG
Sequences:
>Translated_184_residues MKKMVLVSVLLAGFLQAVNLDLSSAKLTWTAFKSKAKTPVNGSFESITYKLGKSQDSLKTLLEGASASMDSLKVNLGDDT KNKNVKEAFFALFKNTNIKVTFRNVIEGDHAGSLTAYVRMNEKLVKVPMQYTIAEDKLVVKGVLDLLSFGLKNELASLAK RCESFHEGLTWSQVEIQFESMIKG >Mature_184_residues MKKMVLVSVLLAGFLQAVNLDLSSAKLTWTAFKSKAKTPVNGSFESITYKLGKSQDSLKTLLEGASASMDSLKVNLGDDT KNKNVKEAFFALFKNTNIKVTFRNVIEGDHAGSLTAYVRMNEKLVKVPMQYTIAEDKLVVKGVLDLLSFGLKNELASLAK RCESFHEGLTWSQVEIQFESMIKG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20318; Mature: 20318
Theoretical pI: Translated: 9.96; Mature: 9.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKMVLVSVLLAGFLQAVNLDLSSAKLTWTAFKSKAKTPVNGSFESITYKLGKSQDSLKT CCHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHCCCCCCCCCCHHHHHEECCCCHHHHHH LLEGASASMDSLKVNLGDDTKNKNVKEAFFALFKNTNIKVTFRNVIEGDHAGSLTAYVRM HHHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEHHHHCCCCCCCEEEEEEE NEKLVKVPMQYTIAEDKLVVKGVLDLLSFGLKNELASLAKRCESFHEGLTWSQVEIQFES CCHHEECCHHEEECCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCHHHEEEHHH MIKG HCCC >Mature Secondary Structure MKKMVLVSVLLAGFLQAVNLDLSSAKLTWTAFKSKAKTPVNGSFESITYKLGKSQDSLKT CCHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHCCCCCCCCCCHHHHHEECCCCHHHHHH LLEGASASMDSLKVNLGDDTKNKNVKEAFFALFKNTNIKVTFRNVIEGDHAGSLTAYVRM HHHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEHHHHCCCCCCCEEEEEEE NEKLVKVPMQYTIAEDKLVVKGVLDLLSFGLKNELASLAKRCESFHEGLTWSQVEIQFES CCHHEECCHHEEECCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCHHHEEEHHH MIKG HCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA