Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
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Accession | NC_008086 |
Length | 1,596,366 |
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The map label for this gene is pabB [H]
Identifier: 108562720
GI number: 108562720
Start: 306666
End: 308345
Strand: Direct
Name: pabB [H]
Synonym: HPAG1_0295
Alternate gene names: 108562720
Gene position: 306666-308345 (Clockwise)
Preceding gene: 108562719
Following gene: 108562721
Centisome position: 19.21
GC content: 36.67
Gene sequence:
>1680_bases ATGATTTTTGGGGATTTTAAATATCAAAAAAGCGTTAAAAAACTCACCGCCACCAATCTTAATGAGCTGAAAAACGCCCT AGATTTCATCTCTCAAAATAGGGGGAATGGGTATTTTGTGGGGTATCTTTTATATGAAGCGCGTTTAGCGTTTCTAGATG AAACTTTTCAAAGCCAAACCCCTTTTTTGTATTTTGAACAATTTTTAGAAAGAAAAAAATATTCTTTAGAGCCTTTAAAA GAGCATGCGTTTTACCCTAAAATCCATAGTTCTTTAGATCAAAAAACTTATTTCAAGCAGTTTAAAGCCGTTAAAGAGCG TCTCAAAAACGGCGATACCTATCAAGTGAATCTCACGATGGATTTATTTTTAGACACTAAAGCCAAACTAGAGCGTGTTT TTAAGGAAGTGGTACACAACCAAAACACGCCTTTTAAGGCTTTGATAGAAAACGAGTTTGGGAGCGTTTTAAGCTTTTCG CCGGAATTGTTTTTTGAATTAGAGTTTTTAGATACAGCGATTAAGATTATTACAAAACCCATGAAAGGCACGATCGCTCG CTCAAAAAACCCCTTAATAGATGAAAAAAACCGATTGTTTTTGCAAAATGATGACAAAAATAGAAGTGAAAATGTGATGA TTGTAGATTTACTGCGTAACGATTTGAGCCGTTTAGCCTTAAAAAATAGCGTGAAAGTCAATCAATTGTTTGAAGTCATC AGCTTGCCTAGCGTGTATCAAATGATAAGCGAGATTGAAGCGAAATTGCCCCTAAAAACCAGTTTGTTTGAGATTTTTAA GGCGTTGTTCCCTTGCGGCTCTGTGACCGGATGCCCTAAAATAAAAACCATGCAAATCATTGAAAGTTTAGAAAAACGCC CTAGGGGGGTGTATTGCGGGGCGATAGGCATGGTTGAAGAAAAAAAAGCCCTTTTTAGCGTGCCTATCCGCACTTTAGAA AAAAGAGCGCATGAAGATTTTTTGCATTTAGGGGTAGGGAGTGGGGTAACTTATAAAAGTAAAGCGCCAAAAGAATATGA AGAGAGCTTTTTAAAATCCTTTTTTGTGATGCCCAAAATAGAATTTGAGATTGTAGAGACGATGAAAATTATCAAAAGGG ATCAAAAATTAGAGATTAACAATAAAAACGCCCATAAAGAACGCTTAATGCATAGCGCCCAATACTTTAATTTCAAATGC GATGAAAATCTTTTAGACTTTGAATTGGAAAAAGAAGGGGTTTTAAGGGTTTTACTCAATAAAAGGGGCAAGCTCATTAA AGAATACAAAACCTTAGAGCCTTTAAAAAGCCTAGAAATCCGTTTGAGTGAAACCCCCATTGATAAACACAATGATTTTT TATACCATAAGACCACTTATGCCCCTTTTTATCAAAACGCTCGAGCGCTCATTAAAAAAGGCGTTATTTTTGATGAAATC TTTTATAACCAGGATCTGGAACTCACTGAGGGCGCTAGGAGCAATCTTGTTTTAGAAATCCATAACAGGCTTTTAACCCC TTATTTTAGCGCGGGCGCGTTAAACGGGACGGGTGTTGTGGGGTTGTTAAAAAAGGGTCTTGTTGGGCATGCCCCTTTAA AATTACACGATCTGCAAAAAGCGGCTAAAATCTATTGTATTAACGCGCTATATGGCTTAGTGGAAGTGAAAATCAAATAA
Upstream 100 bases:
>100_bases CAGAGAAGAAGATCTAGGATTAGAGGGTTTGAGAAGGTCTAAAATGAGCTATAACCCAGTGTTTTTGATAGACAAATACG AAGCCGTTGCTAAAAATTGA
Downstream 100 bases:
>100_bases CCATAAAAATAGAGTAACTAAAACCTCATTTTTAGAAATAGGTTACCCAATAGAGCAAAAAAGTTAAAACTCGCCCACAA TAATGATTAAAGTTTTCACA
Product: para-aminobenzoate synthetase
Products: NA
Alternate protein names: ADC synthase; Para-aminobenzoate synthase component I [H]
Number of amino acids: Translated: 559; Mature: 559
Protein sequence:
>559_residues MIFGDFKYQKSVKKLTATNLNELKNALDFISQNRGNGYFVGYLLYEARLAFLDETFQSQTPFLYFEQFLERKKYSLEPLK EHAFYPKIHSSLDQKTYFKQFKAVKERLKNGDTYQVNLTMDLFLDTKAKLERVFKEVVHNQNTPFKALIENEFGSVLSFS PELFFELEFLDTAIKIITKPMKGTIARSKNPLIDEKNRLFLQNDDKNRSENVMIVDLLRNDLSRLALKNSVKVNQLFEVI SLPSVYQMISEIEAKLPLKTSLFEIFKALFPCGSVTGCPKIKTMQIIESLEKRPRGVYCGAIGMVEEKKALFSVPIRTLE KRAHEDFLHLGVGSGVTYKSKAPKEYEESFLKSFFVMPKIEFEIVETMKIIKRDQKLEINNKNAHKERLMHSAQYFNFKC DENLLDFELEKEGVLRVLLNKRGKLIKEYKTLEPLKSLEIRLSETPIDKHNDFLYHKTTYAPFYQNARALIKKGVIFDEI FYNQDLELTEGARSNLVLEIHNRLLTPYFSAGALNGTGVVGLLKKGLVGHAPLKLHDLQKAAKIYCINALYGLVEVKIK
Sequences:
>Translated_559_residues MIFGDFKYQKSVKKLTATNLNELKNALDFISQNRGNGYFVGYLLYEARLAFLDETFQSQTPFLYFEQFLERKKYSLEPLK EHAFYPKIHSSLDQKTYFKQFKAVKERLKNGDTYQVNLTMDLFLDTKAKLERVFKEVVHNQNTPFKALIENEFGSVLSFS PELFFELEFLDTAIKIITKPMKGTIARSKNPLIDEKNRLFLQNDDKNRSENVMIVDLLRNDLSRLALKNSVKVNQLFEVI SLPSVYQMISEIEAKLPLKTSLFEIFKALFPCGSVTGCPKIKTMQIIESLEKRPRGVYCGAIGMVEEKKALFSVPIRTLE KRAHEDFLHLGVGSGVTYKSKAPKEYEESFLKSFFVMPKIEFEIVETMKIIKRDQKLEINNKNAHKERLMHSAQYFNFKC DENLLDFELEKEGVLRVLLNKRGKLIKEYKTLEPLKSLEIRLSETPIDKHNDFLYHKTTYAPFYQNARALIKKGVIFDEI FYNQDLELTEGARSNLVLEIHNRLLTPYFSAGALNGTGVVGLLKKGLVGHAPLKLHDLQKAAKIYCINALYGLVEVKIK >Mature_559_residues MIFGDFKYQKSVKKLTATNLNELKNALDFISQNRGNGYFVGYLLYEARLAFLDETFQSQTPFLYFEQFLERKKYSLEPLK EHAFYPKIHSSLDQKTYFKQFKAVKERLKNGDTYQVNLTMDLFLDTKAKLERVFKEVVHNQNTPFKALIENEFGSVLSFS PELFFELEFLDTAIKIITKPMKGTIARSKNPLIDEKNRLFLQNDDKNRSENVMIVDLLRNDLSRLALKNSVKVNQLFEVI SLPSVYQMISEIEAKLPLKTSLFEIFKALFPCGSVTGCPKIKTMQIIESLEKRPRGVYCGAIGMVEEKKALFSVPIRTLE KRAHEDFLHLGVGSGVTYKSKAPKEYEESFLKSFFVMPKIEFEIVETMKIIKRDQKLEINNKNAHKERLMHSAQYFNFKC DENLLDFELEKEGVLRVLLNKRGKLIKEYKTLEPLKSLEIRLSETPIDKHNDFLYHKTTYAPFYQNARALIKKGVIFDEI FYNQDLELTEGARSNLVLEIHNRLLTPYFSAGALNGTGVVGLLKKGLVGHAPLKLHDLQKAAKIYCINALYGLVEVKIK
Specific function: Catalyzes the biosynthesis of 4-amino-4-deoxychorismate (ADC) from chorismate and glutamine [H]
COG id: COG0147
COG function: function code EH; Anthranilate/para-aminobenzoate synthases component I
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the anthranilate synthase component I family [H]
Homologues:
Organism=Escherichia coli, GI1788114, Length=295, Percent_Identity=35.2542372881356, Blast_Score=186, Evalue=4e-48, Organism=Escherichia coli, GI1787518, Length=266, Percent_Identity=25.187969924812, Blast_Score=81, Evalue=2e-16, Organism=Saccharomyces cerevisiae, GI6320935, Length=265, Percent_Identity=27.1698113207547, Blast_Score=114, Evalue=3e-26, Organism=Saccharomyces cerevisiae, GI6324361, Length=338, Percent_Identity=27.5147928994083, Blast_Score=96, Evalue=2e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005801 - InterPro: IPR019999 - InterPro: IPR006805 - InterPro: IPR015890 - InterPro: IPR005802 [H]
Pfam domain/function: PF04715 Anth_synt_I_N; PF00425 Chorismate_bind [H]
EC number: =2.6.1.85 [H]
Molecular weight: Translated: 64627; Mature: 64627
Theoretical pI: Translated: 9.62; Mature: 9.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIFGDFKYQKSVKKLTATNLNELKNALDFISQNRGNGYFVGYLLYEARLAFLDETFQSQT CCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHCCC PFLYFEQFLERKKYSLEPLKEHAFYPKIHSSLDQKTYFKQFKAVKERLKNGDTYQVNLTM CHHHHHHHHHHHCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEE DLFLDTKAKLERVFKEVVHNQNTPFKALIENEFGSVLSFSPELFFELEFLDTAIKIITKP EEEECCHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHCCCHHHEEEHHHHHHHHHHHHCC MKGTIARSKNPLIDEKNRLFLQNDDKNRSENVMIVDLLRNDLSRLALKNSVKVNQLFEVI CCCHHHCCCCCCCCCCCCEEEECCCCCCCCCEEEHHHHHHHHHHHHHHCCCCHHHHHHHH SLPSVYQMISEIEAKLPLKTSLFEIFKALFPCGSVTGCPKIKTMQIIESLEKRPRGVYCG CCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEE AIGMVEEKKALFSVPIRTLEKRAHEDFLHLGVGSGVTYKSKAPKEYEESFLKSFFVMPKI CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCH EFEIVETMKIIKRDQKLEINNKNAHKERLMHSAQYFNFKCDENLLDFELEKEGVLRVLLN HHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCEECHHHHHHHHHH KRGKLIKEYKTLEPLKSLEIRLSETPIDKHNDFLYHKTTYAPFYQNARALIKKGVIFDEI HCCHHHHHHHHHCCHHHHHEEECCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCHHHHH FYNQDLELTEGARSNLVLEIHNRLLTPYFSAGALNGTGVVGLLKKGLVGHAPLKLHDLQK HCCCCCCCCCCCCCCEEHEEHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHH AAKIYCINALYGLVEVKIK HHHHHHHHHHHEEEEEEEC >Mature Secondary Structure MIFGDFKYQKSVKKLTATNLNELKNALDFISQNRGNGYFVGYLLYEARLAFLDETFQSQT CCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHCCC PFLYFEQFLERKKYSLEPLKEHAFYPKIHSSLDQKTYFKQFKAVKERLKNGDTYQVNLTM CHHHHHHHHHHHCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEE DLFLDTKAKLERVFKEVVHNQNTPFKALIENEFGSVLSFSPELFFELEFLDTAIKIITKP EEEECCHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHCCCHHHEEEHHHHHHHHHHHHCC MKGTIARSKNPLIDEKNRLFLQNDDKNRSENVMIVDLLRNDLSRLALKNSVKVNQLFEVI CCCHHHCCCCCCCCCCCCEEEECCCCCCCCCEEEHHHHHHHHHHHHHHCCCCHHHHHHHH SLPSVYQMISEIEAKLPLKTSLFEIFKALFPCGSVTGCPKIKTMQIIESLEKRPRGVYCG CCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEE AIGMVEEKKALFSVPIRTLEKRAHEDFLHLGVGSGVTYKSKAPKEYEESFLKSFFVMPKI CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCH EFEIVETMKIIKRDQKLEINNKNAHKERLMHSAQYFNFKCDENLLDFELEKEGVLRVLLN HHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCEECHHHHHHHHHH KRGKLIKEYKTLEPLKSLEIRLSETPIDKHNDFLYHKTTYAPFYQNARALIKKGVIFDEI HCCHHHHHHHHHCCHHHHHEEECCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCHHHHH FYNQDLELTEGARSNLVLEIHNRLLTPYFSAGALNGTGVVGLLKKGLVGHAPLKLHDLQK HCCCCCCCCCCCCCCEEHEEHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHH AAKIYCINALYGLVEVKIK HHHHHHHHHHHEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 6330050; 9097040; 9278503; 7896119; 2251281; 7592344 [H]