| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is glnD [H]
Identifier: 103488264
GI number: 103488264
Start: 2948318
End: 2951125
Strand: Reverse
Name: glnD [H]
Synonym: Sala_2787
Alternate gene names: 103488264
Gene position: 2951125-2948318 (Counterclockwise)
Preceding gene: 103488268
Following gene: 103488254
Centisome position: 88.22
GC content: 66.31
Gene sequence:
>2808_bases ATGCACGGACACTGGCGCTGGCGCGGCGGGCACCCTAAACAGGGGGCGATGGCCCATCCCTTTCACTCGCTTTCGAACTG GCGCGCGATCATCGACCGCCGTGCGCTTGCGGGACAGCTCGATACGATCGCCGCCGAAACACAGGATGCGGCCGCGCGCC GCCGCGCGATGGTCGTGCTGCTCAGAGCGGCGCTCGAGGACGGCCGCGCGGAGGTCGAGCGCCGCCTGCTCGCGCATCCC TCGTCGGGGCGCGTCGCGGCGCAGACGACCGCTTTCCTGATCGACCAGCTCGTCCGGCTCAGCCACGACTTCACCGTTGA GCATCTTTACCCGGCGAACAACCGCTCGGCGGGCGAGCGCATCACCTTGATCGCGGTCGGCGGCTATGGCCGCGGCGAAA TGGCGCCCCACAGCGACATCGACATCGGCTTCCTCACCCCGTTCAAGCAGACGAGCTGGACCGAACAGGCGATCGAGGCG CAGCTCTATACGCTCTGGGATCTGGGGCTGAAGGTCGGCCATTCCAGCCGTTCGCTCGACGAAATGGTACGCGCCGCCAA GGATGACCTCACCATCCGCACCGCGCTGCTCGAAGGGCGCTTCATCTGGGGCGACCGCGAGCTTTACGATCAGGCCGCGG CGCGCTTCGACGCCGAGGTGGTCGCGGGCAATGCGCGCGCCTTCGTCGCCGAAAAGCTTGCGGAACGCGACGAGCGCCAC AAACGCATGGGGGATTCGCGGTACGTCGTCGAACCCAATGTGAAGGAGGGCAAGGGCGGGCTGCGCGACCTCCACACCTT GTTCTGGATCGGCAAGTTCATCCACCGCGTACGCACGGTGCCCGAGCTGGTCGATGCCGGGCTGCTGACGGCGCGCGAGC TCAAGCAGTTCGCGCGCGCCGAAAATTTCCTGCTCGCGGTGCGCTGCCACCTCCATGTCCTCGCGGGCCGCGCCGAGGAC CGGCTGACCTTCGATTTTCAGCGCGAGATCGCGAGCCGCATGAAATTCGCCGACCGCCCCGGCAAGAGCGCGGTCGAACG CTTCATGCAACTCTATTTCCTCCATGCCAAAAGCGTCGGCGACCTGACCGGCACCTTCCTTGCGCATCTCGACGACCAGA TGGCGGCGCGTGGCCGCCGCTTCCTCCCGTCGATCCGGCGGCGGCCGGGCAAGCTCAATGGCTTTGTCCTCGACCGTGGC CGCCTCGCGCTGCCGTCGGACGATTTTTTCGCCGCCGACCCGGTGCGGCTGATCGAGATTTTCGCGCTTGCCGACAAGCA CGGTCTTGAAATCCACCCGCAGGCGATGCGTCAGGCGCGCCACGACGCGAAGCTGATCGAGACGCAGGGCGTACGCCGCG ACGCGCGCGCCAACGCGCTGTTCCTCGACGTGCTCACCAGTCCGCGCGACCCCGAAACGGTGCTGCGCTGGATGAACGAG GCGGGGGTGTTCGGCCGCTTCGTGCCCGATTTCGGCCGCGTCGTCGCGCAGATGCAGTTCGACATGTATCACCATTATAC CGTCGACGAACATACGATCCGCGCGATCGGGCTGCTCGCCGACATCGAACAGGGGCGGCTGAAGGAGGACCACCCGCTTT CGACCGCGATCATGGGGCAGATCCATTCGCGGCGCGTCGTCTATGTCGCGGTGCTGCTGCACGACATCGCCAAGGGGCGC GGCGGCGACCACAGCGTGCTCGGCGCCGAACTGGCTTTGCGCGTATGCCCGCGGCTGGGTTTGAGCGAGGCGGAGACCGA GACCGTGTCATGGCTCGTGCGCTATCACCTGCTCATGTCGGCGACCGCGTTCAAGCGTGACCTCGCCGATTTCAAGACGA TCCTCGACTTCGCGCAAATCGTGCAAAGCCCCGAACGGCTCCGCCTGCTGCTCGTCCTCACCGTCGTCGATATCCGCGCG GTCGGCCCCGGCGTGTGGAACAGCTGGAAACGGCAATTGCTCAGCGAACTCTACGACGCGGCCGAGGAAGTGCTGCGCCT CGGCCACAAGCAGAAGGGCCGCGAACAGCGCATCGCGAGCAAGAAGGAAGCGGTCGCGGCGCAGTTCGGCTTCGACCGCA AGACGTTCGACAAGGTGGCAAAGCGCCTGCCCGAAAGTTACTGGATCGCCGAGCCGGTCGAGGTCATCGCCGCCAACCTC GTCCATATCCGCCAGGCGGGCGACGCACCGCTGCACATCGCCGCGGTCCCCGACGATGACCGCGGCGCGACGCTGGTGAT GGTACTTGCGGCCGACCATCCGGGGCTCTTTTATCGCATCGCGGGGGGCATTCATCTGGCCGGCGGCAATATCATCGACG CGCGCATCCACACGACGCGCGACGGCCTCGCGCTCGACAATTTTCTGGTGCAGGATCCGCTCGGTCGTCCCTTCGCCGAA ACGGGGCAGATCGCCCGGTTGACCCGCGCGATCGAGGACGCGCTCGCCAACCGCCAGAAACTGCTTCCCAAACTCGAAGC CCGCGCCCTCCCGCGCACTCGCGCCGAGGCGTTCCGCGTCGCCCCCAATGTCTTCGTCGACAACAAGGCGTCGAACCGGT TCACCGTGATCGAGGTCAATGCGCAGGACCGCCCCGCGCTGCTCAACCAGCTCGCCTATGCGCTCTTCCAGTCGAAGGTC ACGGTCCACAGCGCCCATGTTGCCACCTATGGCGAACGCGCGGTCGACACCTTTTATGTCACCGACCTGATCGGCGACAA GATCGACAGCCCGGCGCGGGTCAAGACATTGGAGAAACGCCTGCTGGAAGCGGCAACCAGTCAGAGCGAGGAAGTGGTGG CGGCTTAG
Upstream 100 bases:
>100_bases GCTAAGGGTCATCGTCGGCGCTCCCATCGGAATCGAAGAAAGTTGGCCGAGCTTTTAATGAGATTTTTGTCTCATTAAAA GAGTAAAATCTCACTTGGCG
Downstream 100 bases:
>100_bases GCGCCGGAGAAGTCAGGTTCCGGCAGCGCAGGCGATGCAGGTCGCGACCGCCGGGTTGTTTCGCAGCCGTGCCTCGGCAA TCGCCTCGCCGCAGGCCAGG
Product: PII uridylyl-transferase
Products: NA
Alternate protein names: PII uridylyl-transferase; UTase; Uridylyl-removing enzyme [H]
Number of amino acids: Translated: 935; Mature: 935
Protein sequence:
>935_residues MHGHWRWRGGHPKQGAMAHPFHSLSNWRAIIDRRALAGQLDTIAAETQDAAARRRAMVVLLRAALEDGRAEVERRLLAHP SSGRVAAQTTAFLIDQLVRLSHDFTVEHLYPANNRSAGERITLIAVGGYGRGEMAPHSDIDIGFLTPFKQTSWTEQAIEA QLYTLWDLGLKVGHSSRSLDEMVRAAKDDLTIRTALLEGRFIWGDRELYDQAAARFDAEVVAGNARAFVAEKLAERDERH KRMGDSRYVVEPNVKEGKGGLRDLHTLFWIGKFIHRVRTVPELVDAGLLTARELKQFARAENFLLAVRCHLHVLAGRAED RLTFDFQREIASRMKFADRPGKSAVERFMQLYFLHAKSVGDLTGTFLAHLDDQMAARGRRFLPSIRRRPGKLNGFVLDRG RLALPSDDFFAADPVRLIEIFALADKHGLEIHPQAMRQARHDAKLIETQGVRRDARANALFLDVLTSPRDPETVLRWMNE AGVFGRFVPDFGRVVAQMQFDMYHHYTVDEHTIRAIGLLADIEQGRLKEDHPLSTAIMGQIHSRRVVYVAVLLHDIAKGR GGDHSVLGAELALRVCPRLGLSEAETETVSWLVRYHLLMSATAFKRDLADFKTILDFAQIVQSPERLRLLLVLTVVDIRA VGPGVWNSWKRQLLSELYDAAEEVLRLGHKQKGREQRIASKKEAVAAQFGFDRKTFDKVAKRLPESYWIAEPVEVIAANL VHIRQAGDAPLHIAAVPDDDRGATLVMVLAADHPGLFYRIAGGIHLAGGNIIDARIHTTRDGLALDNFLVQDPLGRPFAE TGQIARLTRAIEDALANRQKLLPKLEARALPRTRAEAFRVAPNVFVDNKASNRFTVIEVNAQDRPALLNQLAYALFQSKV TVHSAHVATYGERAVDTFYVTDLIGDKIDSPARVKTLEKRLLEAATSQSEEVVAA
Sequences:
>Translated_935_residues MHGHWRWRGGHPKQGAMAHPFHSLSNWRAIIDRRALAGQLDTIAAETQDAAARRRAMVVLLRAALEDGRAEVERRLLAHP SSGRVAAQTTAFLIDQLVRLSHDFTVEHLYPANNRSAGERITLIAVGGYGRGEMAPHSDIDIGFLTPFKQTSWTEQAIEA QLYTLWDLGLKVGHSSRSLDEMVRAAKDDLTIRTALLEGRFIWGDRELYDQAAARFDAEVVAGNARAFVAEKLAERDERH KRMGDSRYVVEPNVKEGKGGLRDLHTLFWIGKFIHRVRTVPELVDAGLLTARELKQFARAENFLLAVRCHLHVLAGRAED RLTFDFQREIASRMKFADRPGKSAVERFMQLYFLHAKSVGDLTGTFLAHLDDQMAARGRRFLPSIRRRPGKLNGFVLDRG RLALPSDDFFAADPVRLIEIFALADKHGLEIHPQAMRQARHDAKLIETQGVRRDARANALFLDVLTSPRDPETVLRWMNE AGVFGRFVPDFGRVVAQMQFDMYHHYTVDEHTIRAIGLLADIEQGRLKEDHPLSTAIMGQIHSRRVVYVAVLLHDIAKGR GGDHSVLGAELALRVCPRLGLSEAETETVSWLVRYHLLMSATAFKRDLADFKTILDFAQIVQSPERLRLLLVLTVVDIRA VGPGVWNSWKRQLLSELYDAAEEVLRLGHKQKGREQRIASKKEAVAAQFGFDRKTFDKVAKRLPESYWIAEPVEVIAANL VHIRQAGDAPLHIAAVPDDDRGATLVMVLAADHPGLFYRIAGGIHLAGGNIIDARIHTTRDGLALDNFLVQDPLGRPFAE TGQIARLTRAIEDALANRQKLLPKLEARALPRTRAEAFRVAPNVFVDNKASNRFTVIEVNAQDRPALLNQLAYALFQSKV TVHSAHVATYGERAVDTFYVTDLIGDKIDSPARVKTLEKRLLEAATSQSEEVVAA >Mature_935_residues MHGHWRWRGGHPKQGAMAHPFHSLSNWRAIIDRRALAGQLDTIAAETQDAAARRRAMVVLLRAALEDGRAEVERRLLAHP SSGRVAAQTTAFLIDQLVRLSHDFTVEHLYPANNRSAGERITLIAVGGYGRGEMAPHSDIDIGFLTPFKQTSWTEQAIEA QLYTLWDLGLKVGHSSRSLDEMVRAAKDDLTIRTALLEGRFIWGDRELYDQAAARFDAEVVAGNARAFVAEKLAERDERH KRMGDSRYVVEPNVKEGKGGLRDLHTLFWIGKFIHRVRTVPELVDAGLLTARELKQFARAENFLLAVRCHLHVLAGRAED RLTFDFQREIASRMKFADRPGKSAVERFMQLYFLHAKSVGDLTGTFLAHLDDQMAARGRRFLPSIRRRPGKLNGFVLDRG RLALPSDDFFAADPVRLIEIFALADKHGLEIHPQAMRQARHDAKLIETQGVRRDARANALFLDVLTSPRDPETVLRWMNE AGVFGRFVPDFGRVVAQMQFDMYHHYTVDEHTIRAIGLLADIEQGRLKEDHPLSTAIMGQIHSRRVVYVAVLLHDIAKGR GGDHSVLGAELALRVCPRLGLSEAETETVSWLVRYHLLMSATAFKRDLADFKTILDFAQIVQSPERLRLLLVLTVVDIRA VGPGVWNSWKRQLLSELYDAAEEVLRLGHKQKGREQRIASKKEAVAAQFGFDRKTFDKVAKRLPESYWIAEPVEVIAANL VHIRQAGDAPLHIAAVPDDDRGATLVMVLAADHPGLFYRIAGGIHLAGGNIIDARIHTTRDGLALDNFLVQDPLGRPFAE TGQIARLTRAIEDALANRQKLLPKLEARALPRTRAEAFRVAPNVFVDNKASNRFTVIEVNAQDRPALLNQLAYALFQSKV TVHSAHVATYGERAVDTFYVTDLIGDKIDSPARVKTLEKRLLEAATSQSEEVVAA
Specific function: Modifies, by uridylylation or deuridylylation the PII (glnB) regulatory protein [H]
COG id: COG2844
COG function: function code O; UTP:GlnB (protein PII) uridylyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glnD family [H]
Homologues:
Organism=Escherichia coli, GI1786363, Length=788, Percent_Identity=33.248730964467, Blast_Score=402, Evalue=1e-113,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR010043 - InterPro: IPR003607 - InterPro: IPR002934 - InterPro: IPR013546 [H]
Pfam domain/function: PF01842 ACT; PF08335 GlnD_UR_UTase; PF01909 NTP_transf_2 [H]
EC number: =2.7.7.59 [H]
Molecular weight: Translated: 104702; Mature: 104702
Theoretical pI: Translated: 9.70; Mature: 9.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHGHWRWRGGHPKQGAMAHPFHSLSNWRAIIDRRALAGQLDTIAAETQDAAARRRAMVVL CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LRAALEDGRAEVERRLLAHPSSGRVAAQTTAFLIDQLVRLSHDFTVEHLYPANNRSAGER HHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCE ITLIAVGGYGRGEMAPHSDIDIGFLTPFKQTSWTEQAIEAQLYTLWDLGLKVGHSSRSLD EEEEEECCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHH EMVRAAKDDLTIRTALLEGRFIWGDRELYDQAAARFDAEVVAGNARAFVAEKLAERDERH HHHHHHHCCCEEEEHHHCCEEEECCHHHHHHHHHHCCHHHEECCHHHHHHHHHHHHHHHH KRMGDSRYVVEPNVKEGKGGLRDLHTLFWIGKFIHRVRTVPELVDAGLLTARELKQFARA HHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ENFLLAVRCHLHVLAGRAEDRLTFDFQREIASRMKFADRPGKSAVERFMQLYFLHAKSVG HHHEEEHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC DLTGTFLAHLDDQMAARGRRFLPSIRRRPGKLNGFVLDRGRLALPSDDFFAADPVRLIEI HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCEECCCCCCCCCCHHHHHHH FALADKHGLEIHPQAMRQARHDAKLIETQGVRRDARANALFLDVLTSPRDPETVLRWMNE HHHHCCCCCEECHHHHHHHHHHHHHHHHCCCCCHHCCCEEEEEECCCCCCHHHHHHHHHH AGVFGRFVPDFGRVVAQMQFDMYHHYTVDEHTIRAIGLLADIEQGRLKEDHPLSTAIMGQ CCCCHHHCHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH IHSRRVVYVAVLLHDIAKGRGGDHSVLGAELALRVCPRLGLSEAETETVSWLVRYHLLMS HHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH ATAFKRDLADFKTILDFAQIVQSPERLRLLLVLTVVDIRAVGPGVWNSWKRQLLSELYDA HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH AEEVLRLGHKQKGREQRIASKKEAVAAQFGFDRKTFDKVAKRLPESYWIAEPVEVIAANL HHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHH VHIRQAGDAPLHIAAVPDDDRGATLVMVLAADHPGLFYRIAGGIHLAGGNIIDARIHTTR HHHHCCCCCCEEEEECCCCCCCCEEEEEEECCCCCEEEEEECCEEECCCCEEEEEEEECC DGLALDNFLVQDPLGRPFAETGQIARLTRAIEDALANRQKLLPKLEARALPRTRAEAFRV CCCHHHHHHHHCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHC APNVFVDNKASNRFTVIEVNAQDRPALLNQLAYALFQSKVTVHSAHVATYGERAVDTFYV CCCEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHEEHHHHHHCCCHHHHHHHH TDLIGDKIDSPARVKTLEKRLLEAATSQSEEVVAA HHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MHGHWRWRGGHPKQGAMAHPFHSLSNWRAIIDRRALAGQLDTIAAETQDAAARRRAMVVL CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LRAALEDGRAEVERRLLAHPSSGRVAAQTTAFLIDQLVRLSHDFTVEHLYPANNRSAGER HHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCE ITLIAVGGYGRGEMAPHSDIDIGFLTPFKQTSWTEQAIEAQLYTLWDLGLKVGHSSRSLD EEEEEECCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHH EMVRAAKDDLTIRTALLEGRFIWGDRELYDQAAARFDAEVVAGNARAFVAEKLAERDERH HHHHHHHCCCEEEEHHHCCEEEECCHHHHHHHHHHCCHHHEECCHHHHHHHHHHHHHHHH KRMGDSRYVVEPNVKEGKGGLRDLHTLFWIGKFIHRVRTVPELVDAGLLTARELKQFARA HHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ENFLLAVRCHLHVLAGRAEDRLTFDFQREIASRMKFADRPGKSAVERFMQLYFLHAKSVG HHHEEEHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC DLTGTFLAHLDDQMAARGRRFLPSIRRRPGKLNGFVLDRGRLALPSDDFFAADPVRLIEI HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCEECCCCCCCCCCHHHHHHH FALADKHGLEIHPQAMRQARHDAKLIETQGVRRDARANALFLDVLTSPRDPETVLRWMNE HHHHCCCCCEECHHHHHHHHHHHHHHHHCCCCCHHCCCEEEEEECCCCCCHHHHHHHHHH AGVFGRFVPDFGRVVAQMQFDMYHHYTVDEHTIRAIGLLADIEQGRLKEDHPLSTAIMGQ CCCCHHHCHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH IHSRRVVYVAVLLHDIAKGRGGDHSVLGAELALRVCPRLGLSEAETETVSWLVRYHLLMS HHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH ATAFKRDLADFKTILDFAQIVQSPERLRLLLVLTVVDIRAVGPGVWNSWKRQLLSELYDA HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH AEEVLRLGHKQKGREQRIASKKEAVAAQFGFDRKTFDKVAKRLPESYWIAEPVEVIAANL HHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHH VHIRQAGDAPLHIAAVPDDDRGATLVMVLAADHPGLFYRIAGGIHLAGGNIIDARIHTTR HHHHCCCCCCEEEEECCCCCCCCEEEEEEECCCCCEEEEEECCEEECCCCEEEEEEEECC DGLALDNFLVQDPLGRPFAETGQIARLTRAIEDALANRQKLLPKLEARALPRTRAEAFRV CCCHHHHHHHHCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHC APNVFVDNKASNRFTVIEVNAQDRPALLNQLAYALFQSKVTVHSAHVATYGERAVDTFYV CCCEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHEEHHHHHHCCCHHHHHHHH TDLIGDKIDSPARVKTLEKRLLEAATSQSEEVVAA HHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA