| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488228
Identifier: 103488228
GI number: 103488228
Start: 2900000
End: 2900998
Strand: Reverse
Name: 103488228
Synonym: Sala_2751
Alternate gene names: NA
Gene position: 2900998-2900000 (Counterclockwise)
Preceding gene: 103488234
Following gene: 103488226
Centisome position: 86.72
GC content: 69.77
Gene sequence:
>999_bases ATGCGCCGTCTGATTGCCGCTGCCCTGATCTTTCTGACCCTCGGCCCGGTGCCCTGCGCGACGGTGCGCTTTGCCGACGT CGACCTGTCGCAACGGGCCGAGGCGCGTCCGCTTCGCTTCGCTGGCGACACCTCGGCGCCGATGCGCTTCGTGCGCGGCT GGCGCCTCGACAGTCCGAACAGTCGCTTCGGCGGTTTCTCGGCGCTGGCGCACACAGGGCCGGGCCGCTTCCTGCTGGTT GGCGACAATGGCCATTGGACACGCCTGACGTTCGACACGCGCGGCGCAGTGTTGTCGACGCGGATCGGCGCGCTTCCCAC GAGCGACGGTCGCCCGGCGCGCAAGACGATGGCCGATGTCGAGGCGCTGGCCGTCGACCCAAAGGGCGGCGCCGTCTGGC TCGCGCTGGAGGGGATCAACCAGGTCTGGCGGCTCGATGTCGGGCTTGGGCGGATCGAATCGCGACGTCGGCTGCCGCCG CCGCGCTGGCCGACGAACCGCGGGCCCGAGGCCATGGTCCGGCTTGCCGACGGCCGGACCATCCTTTTCTCCGAAGACGC CGACGATGACCCGCGCGGGCGCGAGGCGCTGCTTTATGCGAGCGATCCCGCGGTTCCGGGTCCGGCGCCGCTGCGCTTCT TTTATGATGCGGACGGGCGCGGGCTGGTGAGCGACGCCGCGCCGCTACCTGACGGGCGCATTCTGCTCGTTCACCGGCGG CTCGGCTTCGACCCCCTGTTCACGACGATCGTTTCCGTCCTCGACCCTGCCGACATCGTCCGCGACGGCGTTGTGCGCTC GCGGACGATCGGGCGCGTGCCGCGACCGCTGGCCGAAAATTACGAGGGTGCGGCGGTATCGGTCAAGCGCGACCGCACGT GGCTCTGGCTCGTCTCCGACGATAATTTCAACGTCTGGCAGCGCAGCCTGCTGCTCCAGTTCGAGCTTGTCGACCTGCCG CCAAAGCGGGCGCCGGGCAGCAAAAAGGCCGCGCGGTAA
Upstream 100 bases:
>100_bases CTTGAAATATATCCATATTCCTGCGCCTTCCCTCCTCGCCCCGAGCAAATCGCTTCAAACCCCGAACGGGAAATTAACAG GTCCTGACCCTAGGCCCCCC
Downstream 100 bases:
>100_bases ACCGGCGGCCCCTTTGCGCTGGCGGGTGCGAGTGGCGCGTCAGGCGGCCTTTTCGGCCAGCTTCTTCGCGACTTCCTTCT TCAGCTTGCGCGCGTTCGCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 332; Mature: 332
Protein sequence:
>332_residues MRRLIAAALIFLTLGPVPCATVRFADVDLSQRAEARPLRFAGDTSAPMRFVRGWRLDSPNSRFGGFSALAHTGPGRFLLV GDNGHWTRLTFDTRGAVLSTRIGALPTSDGRPARKTMADVEALAVDPKGGAVWLALEGINQVWRLDVGLGRIESRRRLPP PRWPTNRGPEAMVRLADGRTILFSEDADDDPRGREALLYASDPAVPGPAPLRFFYDADGRGLVSDAAPLPDGRILLVHRR LGFDPLFTTIVSVLDPADIVRDGVVRSRTIGRVPRPLAENYEGAAVSVKRDRTWLWLVSDDNFNVWQRSLLLQFELVDLP PKRAPGSKKAAR
Sequences:
>Translated_332_residues MRRLIAAALIFLTLGPVPCATVRFADVDLSQRAEARPLRFAGDTSAPMRFVRGWRLDSPNSRFGGFSALAHTGPGRFLLV GDNGHWTRLTFDTRGAVLSTRIGALPTSDGRPARKTMADVEALAVDPKGGAVWLALEGINQVWRLDVGLGRIESRRRLPP PRWPTNRGPEAMVRLADGRTILFSEDADDDPRGREALLYASDPAVPGPAPLRFFYDADGRGLVSDAAPLPDGRILLVHRR LGFDPLFTTIVSVLDPADIVRDGVVRSRTIGRVPRPLAENYEGAAVSVKRDRTWLWLVSDDNFNVWQRSLLLQFELVDLP PKRAPGSKKAAR >Mature_332_residues MRRLIAAALIFLTLGPVPCATVRFADVDLSQRAEARPLRFAGDTSAPMRFVRGWRLDSPNSRFGGFSALAHTGPGRFLLV GDNGHWTRLTFDTRGAVLSTRIGALPTSDGRPARKTMADVEALAVDPKGGAVWLALEGINQVWRLDVGLGRIESRRRLPP PRWPTNRGPEAMVRLADGRTILFSEDADDDPRGREALLYASDPAVPGPAPLRFFYDADGRGLVSDAAPLPDGRILLVHRR LGFDPLFTTIVSVLDPADIVRDGVVRSRTIGRVPRPLAENYEGAAVSVKRDRTWLWLVSDDNFNVWQRSLLLQFELVDLP PKRAPGSKKAAR
Specific function: Unknown
COG id: COG4246
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36551; Mature: 36551
Theoretical pI: Translated: 11.05; Mature: 11.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRLIAAALIFLTLGPVPCATVRFADVDLSQRAEARPLRFAGDTSAPMRFVRGWRLDSPN CHHHHHHHHHHHHCCCCCCCEEEEECCCHHHCCCCCCEEECCCCCHHHHHHHCCCCCCCC SRFGGFSALAHTGPGRFLLVGDNGHWTRLTFDTRGAVLSTRIGALPTSDGRPARKTMADV CCCCCEEHHEECCCCCEEEECCCCCEEEEEECCCCCEEEHHCCCCCCCCCCCHHHHHHHH EALAVDPKGGAVWLALEGINQVWRLDVGLGRIESRRRLPPPRWPTNRGPEAMVRLADGRT HEEEECCCCCEEEEEECCCCEEEEEECCCCCHHHHCCCCCCCCCCCCCHHHEEEEECCCE ILFSEDADDDPRGREALLYASDPAVPGPAPLRFFYDADGRGLVSDAAPLPDGRILLVHRR EEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCCCEEECCCCCCCCCCEEEEEEC LGFDPLFTTIVSVLDPADIVRDGVVRSRTIGRVPRPLAENYEGAAVSVKRDRTWLWLVSD CCCCHHHHHHHHHHCHHHHHHHCHHHHHHHCCCCCHHHCCCCCCEEEEECCCEEEEEEEC DNFNVWQRSLLLQFELVDLPPKRAPGSKKAAR CCCCHHHHEEEEEEEEECCCCCCCCCCCCCCC >Mature Secondary Structure MRRLIAAALIFLTLGPVPCATVRFADVDLSQRAEARPLRFAGDTSAPMRFVRGWRLDSPN CHHHHHHHHHHHHCCCCCCCEEEEECCCHHHCCCCCCEEECCCCCHHHHHHHCCCCCCCC SRFGGFSALAHTGPGRFLLVGDNGHWTRLTFDTRGAVLSTRIGALPTSDGRPARKTMADV CCCCCEEHHEECCCCCEEEECCCCCEEEEEECCCCCEEEHHCCCCCCCCCCCHHHHHHHH EALAVDPKGGAVWLALEGINQVWRLDVGLGRIESRRRLPPPRWPTNRGPEAMVRLADGRT HEEEECCCCCEEEEEECCCCEEEEEECCCCCHHHHCCCCCCCCCCCCCHHHEEEEECCCE ILFSEDADDDPRGREALLYASDPAVPGPAPLRFFYDADGRGLVSDAAPLPDGRILLVHRR EEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCCCEEECCCCCCCCCCEEEEEEC LGFDPLFTTIVSVLDPADIVRDGVVRSRTIGRVPRPLAENYEGAAVSVKRDRTWLWLVSD CCCCHHHHHHHHHHCHHHHHHHCHHHHHHHCCCCCHHHCCCCCCEEEEECCCEEEEEEEC DNFNVWQRSLLLQFELVDLPPKRAPGSKKAAR CCCCHHHHEEEEEEEEECCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA