Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103488228

Identifier: 103488228

GI number: 103488228

Start: 2900000

End: 2900998

Strand: Reverse

Name: 103488228

Synonym: Sala_2751

Alternate gene names: NA

Gene position: 2900998-2900000 (Counterclockwise)

Preceding gene: 103488234

Following gene: 103488226

Centisome position: 86.72

GC content: 69.77

Gene sequence:

>999_bases
ATGCGCCGTCTGATTGCCGCTGCCCTGATCTTTCTGACCCTCGGCCCGGTGCCCTGCGCGACGGTGCGCTTTGCCGACGT
CGACCTGTCGCAACGGGCCGAGGCGCGTCCGCTTCGCTTCGCTGGCGACACCTCGGCGCCGATGCGCTTCGTGCGCGGCT
GGCGCCTCGACAGTCCGAACAGTCGCTTCGGCGGTTTCTCGGCGCTGGCGCACACAGGGCCGGGCCGCTTCCTGCTGGTT
GGCGACAATGGCCATTGGACACGCCTGACGTTCGACACGCGCGGCGCAGTGTTGTCGACGCGGATCGGCGCGCTTCCCAC
GAGCGACGGTCGCCCGGCGCGCAAGACGATGGCCGATGTCGAGGCGCTGGCCGTCGACCCAAAGGGCGGCGCCGTCTGGC
TCGCGCTGGAGGGGATCAACCAGGTCTGGCGGCTCGATGTCGGGCTTGGGCGGATCGAATCGCGACGTCGGCTGCCGCCG
CCGCGCTGGCCGACGAACCGCGGGCCCGAGGCCATGGTCCGGCTTGCCGACGGCCGGACCATCCTTTTCTCCGAAGACGC
CGACGATGACCCGCGCGGGCGCGAGGCGCTGCTTTATGCGAGCGATCCCGCGGTTCCGGGTCCGGCGCCGCTGCGCTTCT
TTTATGATGCGGACGGGCGCGGGCTGGTGAGCGACGCCGCGCCGCTACCTGACGGGCGCATTCTGCTCGTTCACCGGCGG
CTCGGCTTCGACCCCCTGTTCACGACGATCGTTTCCGTCCTCGACCCTGCCGACATCGTCCGCGACGGCGTTGTGCGCTC
GCGGACGATCGGGCGCGTGCCGCGACCGCTGGCCGAAAATTACGAGGGTGCGGCGGTATCGGTCAAGCGCGACCGCACGT
GGCTCTGGCTCGTCTCCGACGATAATTTCAACGTCTGGCAGCGCAGCCTGCTGCTCCAGTTCGAGCTTGTCGACCTGCCG
CCAAAGCGGGCGCCGGGCAGCAAAAAGGCCGCGCGGTAA

Upstream 100 bases:

>100_bases
CTTGAAATATATCCATATTCCTGCGCCTTCCCTCCTCGCCCCGAGCAAATCGCTTCAAACCCCGAACGGGAAATTAACAG
GTCCTGACCCTAGGCCCCCC

Downstream 100 bases:

>100_bases
ACCGGCGGCCCCTTTGCGCTGGCGGGTGCGAGTGGCGCGTCAGGCGGCCTTTTCGGCCAGCTTCTTCGCGACTTCCTTCT
TCAGCTTGCGCGCGTTCGCC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 332; Mature: 332

Protein sequence:

>332_residues
MRRLIAAALIFLTLGPVPCATVRFADVDLSQRAEARPLRFAGDTSAPMRFVRGWRLDSPNSRFGGFSALAHTGPGRFLLV
GDNGHWTRLTFDTRGAVLSTRIGALPTSDGRPARKTMADVEALAVDPKGGAVWLALEGINQVWRLDVGLGRIESRRRLPP
PRWPTNRGPEAMVRLADGRTILFSEDADDDPRGREALLYASDPAVPGPAPLRFFYDADGRGLVSDAAPLPDGRILLVHRR
LGFDPLFTTIVSVLDPADIVRDGVVRSRTIGRVPRPLAENYEGAAVSVKRDRTWLWLVSDDNFNVWQRSLLLQFELVDLP
PKRAPGSKKAAR

Sequences:

>Translated_332_residues
MRRLIAAALIFLTLGPVPCATVRFADVDLSQRAEARPLRFAGDTSAPMRFVRGWRLDSPNSRFGGFSALAHTGPGRFLLV
GDNGHWTRLTFDTRGAVLSTRIGALPTSDGRPARKTMADVEALAVDPKGGAVWLALEGINQVWRLDVGLGRIESRRRLPP
PRWPTNRGPEAMVRLADGRTILFSEDADDDPRGREALLYASDPAVPGPAPLRFFYDADGRGLVSDAAPLPDGRILLVHRR
LGFDPLFTTIVSVLDPADIVRDGVVRSRTIGRVPRPLAENYEGAAVSVKRDRTWLWLVSDDNFNVWQRSLLLQFELVDLP
PKRAPGSKKAAR
>Mature_332_residues
MRRLIAAALIFLTLGPVPCATVRFADVDLSQRAEARPLRFAGDTSAPMRFVRGWRLDSPNSRFGGFSALAHTGPGRFLLV
GDNGHWTRLTFDTRGAVLSTRIGALPTSDGRPARKTMADVEALAVDPKGGAVWLALEGINQVWRLDVGLGRIESRRRLPP
PRWPTNRGPEAMVRLADGRTILFSEDADDDPRGREALLYASDPAVPGPAPLRFFYDADGRGLVSDAAPLPDGRILLVHRR
LGFDPLFTTIVSVLDPADIVRDGVVRSRTIGRVPRPLAENYEGAAVSVKRDRTWLWLVSDDNFNVWQRSLLLQFELVDLP
PKRAPGSKKAAR

Specific function: Unknown

COG id: COG4246

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36551; Mature: 36551

Theoretical pI: Translated: 11.05; Mature: 11.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRLIAAALIFLTLGPVPCATVRFADVDLSQRAEARPLRFAGDTSAPMRFVRGWRLDSPN
CHHHHHHHHHHHHCCCCCCCEEEEECCCHHHCCCCCCEEECCCCCHHHHHHHCCCCCCCC
SRFGGFSALAHTGPGRFLLVGDNGHWTRLTFDTRGAVLSTRIGALPTSDGRPARKTMADV
CCCCCEEHHEECCCCCEEEECCCCCEEEEEECCCCCEEEHHCCCCCCCCCCCHHHHHHHH
EALAVDPKGGAVWLALEGINQVWRLDVGLGRIESRRRLPPPRWPTNRGPEAMVRLADGRT
HEEEECCCCCEEEEEECCCCEEEEEECCCCCHHHHCCCCCCCCCCCCCHHHEEEEECCCE
ILFSEDADDDPRGREALLYASDPAVPGPAPLRFFYDADGRGLVSDAAPLPDGRILLVHRR
EEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCCCEEECCCCCCCCCCEEEEEEC
LGFDPLFTTIVSVLDPADIVRDGVVRSRTIGRVPRPLAENYEGAAVSVKRDRTWLWLVSD
CCCCHHHHHHHHHHCHHHHHHHCHHHHHHHCCCCCHHHCCCCCCEEEEECCCEEEEEEEC
DNFNVWQRSLLLQFELVDLPPKRAPGSKKAAR
CCCCHHHHEEEEEEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MRRLIAAALIFLTLGPVPCATVRFADVDLSQRAEARPLRFAGDTSAPMRFVRGWRLDSPN
CHHHHHHHHHHHHCCCCCCCEEEEECCCHHHCCCCCCEEECCCCCHHHHHHHCCCCCCCC
SRFGGFSALAHTGPGRFLLVGDNGHWTRLTFDTRGAVLSTRIGALPTSDGRPARKTMADV
CCCCCEEHHEECCCCCEEEECCCCCEEEEEECCCCCEEEHHCCCCCCCCCCCHHHHHHHH
EALAVDPKGGAVWLALEGINQVWRLDVGLGRIESRRRLPPPRWPTNRGPEAMVRLADGRT
HEEEECCCCCEEEEEECCCCEEEEEECCCCCHHHHCCCCCCCCCCCCCHHHEEEEECCCE
ILFSEDADDDPRGREALLYASDPAVPGPAPLRFFYDADGRGLVSDAAPLPDGRILLVHRR
EEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCCCEEECCCCCCCCCCEEEEEEC
LGFDPLFTTIVSVLDPADIVRDGVVRSRTIGRVPRPLAENYEGAAVSVKRDRTWLWLVSD
CCCCHHHHHHHHHHCHHHHHHHCHHHHHHHCCCCCHHHCCCCCCEEEEECCCEEEEEEEC
DNFNVWQRSLLLQFELVDLPPKRAPGSKKAAR
CCCCHHHHEEEEEEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA