Click here to switch to the map view.

The map label for this gene is recS [H]

Identifier: 103488118

GI number: 103488118

Start: 2782374

End: 2784869

Strand: Reverse

Name: recS [H]

Synonym: Sala_2641

Alternate gene names: 103488118

Gene position: 2784869-2782374 (Counterclockwise)

Preceding gene: 103488119

Following gene: 103488117

Centisome position: 83.25

GC content: 64.54

Gene sequence:

>2496_bases
ATGGTTGACCTCGATGGCCATGACGCCTTTGTCGCCCTGAGCCAATTGCTCATCCGCACTGATAGCGAGGCGGACTGGCA
AGCCCGGTCACCCGCGGTCGAGCGTTTGCGCAAAGCGCTGGTCGACCCGGCGCGCCAGGCGAGCGCACTCGATCTGGCCG
TGTTGCTCCGCCAAGCCATGACCTATGAGCATGTCCGGCGCGGCGCCATGGTGTCCCCCGCTGTCCTGGTTTCGCACCCA
CGCTTCGACGGGTTCACCAGTTGGGATGCGGTCGGGCTACACAACACTTCCGCTGGCGAAGCGCGACTGGTGACGCTCCA
GCCCTGGAAGCCGGCATGGCTCGTGGCTCCCGGCGACGGCGTCGAAACCCTTGCTGCGTCCGAGGCAACTCGCCGTGAGT
TTAACAGGGCGGGTTGCGAGGGCGATCCATTGCTCACCGCTGTCGGTCGAACCTCCTATCGCAGCCGCGGACAGCGCGCT
GCCGTACGTGCCGCGCTCTCGACCCCCGCCGGCGGAAGCCTCGTCGTTGCTCTGCCTACCGGCGAGGGCAAGAGCATGAT
CTTCCAGCTGGTCCAGACGGTCGGCTTCGTCGGCGCGGACCAAGCGGAAAACAGCGGCGTAACCCTAGTGATCGTCCCTA
CCGTCGCGCTCGGGGTCAATCATGAACAGGAAGCGGTCGATGTCTGCGGCCTGTCGCGCCCGCTCGCTTTCCAGGGTGGC
AACGACGCCCAGAACAATATTATCGCCGAACGGATCGCCGACGGCACCCAGGGCCTGTGCTTCGCGTCGCCTGAAGCCGC
ATGCGGCCGTCTGCGCGACCCGTTGCGGCGCGCAGCCGAGGCAGGTCTGTTGCGCGCGCTGGTGATCGACGAAGCCCATC
TCGTCGACCAATGGGGAACGGGCTTTCGGACCGAGTTCCAGGAATTGAGCGGCTTGCGGCGCGAACTGCTGTCGGCAGCA
CCGCCCGGCCAAGCGCTACGCACCATCATGTTGTCGGCGACACTCACGGACTCCTCACTCGAAACCTTGCGCTCTCTGTT
CGGCGCCGAAAGCAATTTTGAAAGCCTGGCGGCGGTGCAATTGCGGCCCGAACCGGACTATTGGATTGCGCCATCGACCA
ACGAGGCCAGCCGAACTGCCCAGGTCCTGGAGGCGCTTCACCACGTGCCTCGGCCGGCGGTGCTTTATGTCACCGAGGTT
GCGGCCGCCAACGCCTGGTATGCGCAGCTGATCGACGCGGGGTTCCGCCGGGTTCGCAAGCTCCACGGCAAGACCGGGCG
CGCCGAGCGAGAGGAGATTGTCGGACAGTGGCGCGACGGCGCACTCGATATCGTCGTCGGAACTTCCGCGTTCGGGCTTG
GCATCGATTACGGGCATGCTCGCAGCGTGATCCACGCCTGCGTTCCAGAGACGCTGGATCGCTTCTACCAAGAGGTCGGG
CGCGGCGGGCGCGACGGCAAGGCAGCGCTTTCGCTGATTGTGCCGACAGACAACGACATGGGGATCGCCGAGCGCATTAA
CGCCCAGCAAGTCATCAGCATTGATCGCGGCTACCATCGCTGGTCTGCGATGTTCGCGCGAAAGGCCAGCCTTGGGAACG
GACGCTTCGCCGTGCGGATCGACGGCCGACCCGGCACCGATGAACGCGACATCGACATGTTCGGCGATGCCAATACCGAC
TGGAACTTGCGCACGGTCGCCCTGATGGCGCGTGCCGGCATTCTGCGACTGCTCGGCACACCCTATCCGCGGATCGAACA
GGAGGGCGACTGGCTCGAGGTCGAGATCATCGACGATCATCATCTCGACCTAGCGCTATGGCAGTCGCGCGTCGAACCCG
TGCGCCGGGTCGGCTGGCTTGCCGCCAAGCGCAATCTCGACCTTATGCGCGAATATCTGCGCAACGATCGCTGTCCGGCC
GCGATCCTTGAAGATTTGTACGGTGCGAACCGGGTTGGACGGACGTGCAGCCGCTGCAGCCGGTGCCGGTCTGACGAGGC
TTGTCGCCTCAACAGCGTAGCAGTCGGCGAACCGCGCGGCCCATGGACCGAGCCGCTCGATCCGCTGGTCGCCAATCTTC
TCGATCGCGATCTCCGGCTTTTGGTCAGCTACGATCCCGGCGAACTCGCACGCAACGCGTCGCGCCGGCTTGGTGACACG
CTGCAGCGCCTAGCGCAGGCCCGTCTCGCCAAGGTGATCACGCTCGGCCCGCAGCCGTTTGACATGGACCGGGTTCTCAA
ATTTGCGGAAAAGTTGGCATTCTTCGTCAGCGACCTGCCCTCGCTTGCGTTATCGCGCCTTCCGCGTGGCCCCGAACTTG
TCATGGTCGGCGACCGGCAAACACTCGAGCCGCAAAACCTCGCGCCGCGGCCTGATAATCCTCGGATCTTCCTGGCCCCA
ATTGACCAGCCCGCCCCAGATGGACGCAGATTGAAGGATGTATTTGGCGGTCGGACGCTGACGCTCGACGAGTTTAATGC
AAGAGTAGCCCAATGA

Upstream 100 bases:

>100_bases
GCTCTGATCGAGTCAATCCTGCCCAGCATCGCATCACCCGCCATCCGGCTCGACGCCATGGGATGTTTCATCCTGGGTGG
GGCGCTCACGAGGTCCGCTC

Downstream 100 bases:

>100_bases
GTATAGTTACAACTGCCCAAGCTGTTCCGAGTCGATTGTTCGCGATCTATGCCGCCTTGTTCGACAGCGAAAATGGTGAA
GTCAAAGACCGGATCGAGGC

Product: helicase-like protein

Products: NA

Alternate protein names: Recombination protein S [H]

Number of amino acids: Translated: 831; Mature: 831

Protein sequence:

>831_residues
MVDLDGHDAFVALSQLLIRTDSEADWQARSPAVERLRKALVDPARQASALDLAVLLRQAMTYEHVRRGAMVSPAVLVSHP
RFDGFTSWDAVGLHNTSAGEARLVTLQPWKPAWLVAPGDGVETLAASEATRREFNRAGCEGDPLLTAVGRTSYRSRGQRA
AVRAALSTPAGGSLVVALPTGEGKSMIFQLVQTVGFVGADQAENSGVTLVIVPTVALGVNHEQEAVDVCGLSRPLAFQGG
NDAQNNIIAERIADGTQGLCFASPEAACGRLRDPLRRAAEAGLLRALVIDEAHLVDQWGTGFRTEFQELSGLRRELLSAA
PPGQALRTIMLSATLTDSSLETLRSLFGAESNFESLAAVQLRPEPDYWIAPSTNEASRTAQVLEALHHVPRPAVLYVTEV
AAANAWYAQLIDAGFRRVRKLHGKTGRAEREEIVGQWRDGALDIVVGTSAFGLGIDYGHARSVIHACVPETLDRFYQEVG
RGGRDGKAALSLIVPTDNDMGIAERINAQQVISIDRGYHRWSAMFARKASLGNGRFAVRIDGRPGTDERDIDMFGDANTD
WNLRTVALMARAGILRLLGTPYPRIEQEGDWLEVEIIDDHHLDLALWQSRVEPVRRVGWLAAKRNLDLMREYLRNDRCPA
AILEDLYGANRVGRTCSRCSRCRSDEACRLNSVAVGEPRGPWTEPLDPLVANLLDRDLRLLVSYDPGELARNASRRLGDT
LQRLAQARLAKVITLGPQPFDMDRVLKFAEKLAFFVSDLPSLALSRLPRGPELVMVGDRQTLEPQNLAPRPDNPRIFLAP
IDQPAPDGRRLKDVFGGRTLTLDEFNARVAQ

Sequences:

>Translated_831_residues
MVDLDGHDAFVALSQLLIRTDSEADWQARSPAVERLRKALVDPARQASALDLAVLLRQAMTYEHVRRGAMVSPAVLVSHP
RFDGFTSWDAVGLHNTSAGEARLVTLQPWKPAWLVAPGDGVETLAASEATRREFNRAGCEGDPLLTAVGRTSYRSRGQRA
AVRAALSTPAGGSLVVALPTGEGKSMIFQLVQTVGFVGADQAENSGVTLVIVPTVALGVNHEQEAVDVCGLSRPLAFQGG
NDAQNNIIAERIADGTQGLCFASPEAACGRLRDPLRRAAEAGLLRALVIDEAHLVDQWGTGFRTEFQELSGLRRELLSAA
PPGQALRTIMLSATLTDSSLETLRSLFGAESNFESLAAVQLRPEPDYWIAPSTNEASRTAQVLEALHHVPRPAVLYVTEV
AAANAWYAQLIDAGFRRVRKLHGKTGRAEREEIVGQWRDGALDIVVGTSAFGLGIDYGHARSVIHACVPETLDRFYQEVG
RGGRDGKAALSLIVPTDNDMGIAERINAQQVISIDRGYHRWSAMFARKASLGNGRFAVRIDGRPGTDERDIDMFGDANTD
WNLRTVALMARAGILRLLGTPYPRIEQEGDWLEVEIIDDHHLDLALWQSRVEPVRRVGWLAAKRNLDLMREYLRNDRCPA
AILEDLYGANRVGRTCSRCSRCRSDEACRLNSVAVGEPRGPWTEPLDPLVANLLDRDLRLLVSYDPGELARNASRRLGDT
LQRLAQARLAKVITLGPQPFDMDRVLKFAEKLAFFVSDLPSLALSRLPRGPELVMVGDRQTLEPQNLAPRPDNPRIFLAP
IDQPAPDGRRLKDVFGGRTLTLDEFNARVAQ
>Mature_831_residues
MVDLDGHDAFVALSQLLIRTDSEADWQARSPAVERLRKALVDPARQASALDLAVLLRQAMTYEHVRRGAMVSPAVLVSHP
RFDGFTSWDAVGLHNTSAGEARLVTLQPWKPAWLVAPGDGVETLAASEATRREFNRAGCEGDPLLTAVGRTSYRSRGQRA
AVRAALSTPAGGSLVVALPTGEGKSMIFQLVQTVGFVGADQAENSGVTLVIVPTVALGVNHEQEAVDVCGLSRPLAFQGG
NDAQNNIIAERIADGTQGLCFASPEAACGRLRDPLRRAAEAGLLRALVIDEAHLVDQWGTGFRTEFQELSGLRRELLSAA
PPGQALRTIMLSATLTDSSLETLRSLFGAESNFESLAAVQLRPEPDYWIAPSTNEASRTAQVLEALHHVPRPAVLYVTEV
AAANAWYAQLIDAGFRRVRKLHGKTGRAEREEIVGQWRDGALDIVVGTSAFGLGIDYGHARSVIHACVPETLDRFYQEVG
RGGRDGKAALSLIVPTDNDMGIAERINAQQVISIDRGYHRWSAMFARKASLGNGRFAVRIDGRPGTDERDIDMFGDANTD
WNLRTVALMARAGILRLLGTPYPRIEQEGDWLEVEIIDDHHLDLALWQSRVEPVRRVGWLAAKRNLDLMREYLRNDRCPA
AILEDLYGANRVGRTCSRCSRCRSDEACRLNSVAVGEPRGPWTEPLDPLVANLLDRDLRLLVSYDPGELARNASRRLGDT
LQRLAQARLAKVITLGPQPFDMDRVLKFAEKLAFFVSDLPSLALSRLPRGPELVMVGDRQTLEPQNLAPRPDNPRIFLAP
IDQPAPDGRRLKDVFGGRTLTLDEFNARVAQ

Specific function: Probable DNA helicase. Required in synaptic and/or post- synaptic stages of recombination. Probably has overlapping function with recQ (AC O34748). It probably acts to help generate ss-DNA from ds-DNA breaks [H]

COG id: COG0514

COG function: function code L; Superfamily II DNA helicase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

Organism=Homo sapiens, GI4557365, Length=397, Percent_Identity=28.463476070529, Blast_Score=119, Evalue=8e-27,
Organism=Homo sapiens, GI14591902, Length=330, Percent_Identity=25.4545454545455, Blast_Score=99, Evalue=2e-20,
Organism=Homo sapiens, GI14591904, Length=330, Percent_Identity=25.4545454545455, Blast_Score=99, Evalue=2e-20,
Organism=Homo sapiens, GI21071032, Length=229, Percent_Identity=27.0742358078603, Blast_Score=76, Evalue=2e-13,
Organism=Homo sapiens, GI224593278, Length=379, Percent_Identity=25.3298153034301, Blast_Score=68, Evalue=4e-11,
Organism=Homo sapiens, GI87196351, Length=307, Percent_Identity=25.7328990228013, Blast_Score=68, Evalue=5e-11,
Organism=Homo sapiens, GI301171467, Length=307, Percent_Identity=25.7328990228013, Blast_Score=68, Evalue=5e-11,
Organism=Homo sapiens, GI301171475, Length=307, Percent_Identity=25.7328990228013, Blast_Score=67, Evalue=5e-11,
Organism=Escherichia coli, GI48994977, Length=387, Percent_Identity=24.5478036175711, Blast_Score=92, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI25145561, Length=364, Percent_Identity=28.8461538461538, Blast_Score=122, Evalue=8e-28,
Organism=Caenorhabditis elegans, GI71987993, Length=347, Percent_Identity=25.6484149855908, Blast_Score=112, Evalue=7e-25,
Organism=Caenorhabditis elegans, GI71987997, Length=347, Percent_Identity=25.6484149855908, Blast_Score=112, Evalue=8e-25,
Organism=Caenorhabditis elegans, GI32564293, Length=384, Percent_Identity=25.78125, Blast_Score=83, Evalue=6e-16,
Organism=Drosophila melanogaster, GI24646066, Length=379, Percent_Identity=25.8575197889182, Blast_Score=106, Evalue=8e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR011545
- InterPro:   IPR002464
- InterPro:   IPR004589
- InterPro:   IPR001650
- InterPro:   IPR014021 [H]

Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 91003; Mature: 91003

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDLDGHDAFVALSQLLIRTDSEADWQARSPAVERLRKALVDPARQASALDLAVLLRQAM
CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
TYEHVRRGAMVSPAVLVSHPRFDGFTSWDAVGLHNTSAGEARLVTLQPWKPAWLVAPGDG
HHHHHHCCCCCCCHHEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCC
VETLAASEATRREFNRAGCEGDPLLTAVGRTSYRSRGQRAAVRAALSTPAGGSLVVALPT
HHHHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHCCHHHHHHHHHCCCCCCEEEEEEEC
GEGKSMIFQLVQTVGFVGADQAENSGVTLVIVPTVALGVNHEQEAVDVCGLSRPLAFQGG
CCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCCCCHHHHHHHCCCCCCEECCC
NDAQNNIIAERIADGTQGLCFASPEAACGRLRDPLRRAAEAGLLRALVIDEAHLVDQWGT
CCHHHHHHHHHHCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GFRTEFQELSGLRRELLSAAPPGQALRTIMLSATLTDSSLETLRSLFGAESNFESLAAVQ
CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCEEEEE
LRPEPDYWIAPSTNEASRTAQVLEALHHVPRPAVLYVTEVAAANAWYAQLIDAGFRRVRK
ECCCCCEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHH
LHGKTGRAEREEIVGQWRDGALDIVVGTSAFGLGIDYGHARSVIHACVPETLDRFYQEVG
HHCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
RGGRDGKAALSLIVPTDNDMGIAERINAQQVISIDRGYHRWSAMFARKASLGNGRFAVRI
CCCCCCCEEEEEEEECCCCCCHHHHCCHHHHEEHHCCHHHHHHHHHHHHCCCCCEEEEEE
DGRPGTDERDIDMFGDANTDWNLRTVALMARAGILRLLGTPYPRIEQEGDWLEVEIIDDH
CCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCC
HLDLALWQSRVEPVRRVGWLAAKRNLDLMREYLRNDRCPAAILEDLYGANRVGRTCSRCS
CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHH
RCRSDEACRLNSVAVGEPRGPWTEPLDPLVANLLDRDLRLLVSYDPGELARNASRRLGDT
HCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHH
LQRLAQARLAKVITLGPQPFDMDRVLKFAEKLAFFVSDLPSLALSRLPRGPELVMVGDRQ
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCC
TLEPQNLAPRPDNPRIFLAPIDQPAPDGRRLKDVFGGRTLTLDEFNARVAQ
CCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHCCCEEEEHHCCHHCCC
>Mature Secondary Structure
MVDLDGHDAFVALSQLLIRTDSEADWQARSPAVERLRKALVDPARQASALDLAVLLRQAM
CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
TYEHVRRGAMVSPAVLVSHPRFDGFTSWDAVGLHNTSAGEARLVTLQPWKPAWLVAPGDG
HHHHHHCCCCCCCHHEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCC
VETLAASEATRREFNRAGCEGDPLLTAVGRTSYRSRGQRAAVRAALSTPAGGSLVVALPT
HHHHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHCCHHHHHHHHHCCCCCCEEEEEEEC
GEGKSMIFQLVQTVGFVGADQAENSGVTLVIVPTVALGVNHEQEAVDVCGLSRPLAFQGG
CCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCCCCHHHHHHHCCCCCCEECCC
NDAQNNIIAERIADGTQGLCFASPEAACGRLRDPLRRAAEAGLLRALVIDEAHLVDQWGT
CCHHHHHHHHHHCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GFRTEFQELSGLRRELLSAAPPGQALRTIMLSATLTDSSLETLRSLFGAESNFESLAAVQ
CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCEEEEE
LRPEPDYWIAPSTNEASRTAQVLEALHHVPRPAVLYVTEVAAANAWYAQLIDAGFRRVRK
ECCCCCEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHH
LHGKTGRAEREEIVGQWRDGALDIVVGTSAFGLGIDYGHARSVIHACVPETLDRFYQEVG
HHCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
RGGRDGKAALSLIVPTDNDMGIAERINAQQVISIDRGYHRWSAMFARKASLGNGRFAVRI
CCCCCCCEEEEEEEECCCCCCHHHHCCHHHHEEHHCCHHHHHHHHHHHHCCCCCEEEEEE
DGRPGTDERDIDMFGDANTDWNLRTVALMARAGILRLLGTPYPRIEQEGDWLEVEIIDDH
CCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCC
HLDLALWQSRVEPVRRVGWLAAKRNLDLMREYLRNDRCPAAILEDLYGANRVGRTCSRCS
CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHH
RCRSDEACRLNSVAVGEPRGPWTEPLDPLVANLLDRDLRLLVSYDPGELARNASRRLGDT
HCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHH
LQRLAQARLAKVITLGPQPFDMDRVLKFAEKLAFFVSDLPSLALSRLPRGPELVMVGDRQ
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCC
TLEPQNLAPRPDNPRIFLAPIDQPAPDGRRLKDVFGGRTLTLDEFNARVAQ
CCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHCCCEEEEHHCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377; 9642195 [H]