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The map label for this gene is ydfH [C]

Identifier: 103487986

GI number: 103487986

Start: 2644203

End: 2644952

Strand: Reverse

Name: ydfH [C]

Synonym: Sala_2507

Alternate gene names: 103487986

Gene position: 2644952-2644203 (Counterclockwise)

Preceding gene: 103487988

Following gene: 103487985

Centisome position: 79.07

GC content: 65.6

Gene sequence:

>750_bases
GTGGAAATGGCCGCGACGAAGACCGACGACGAGCAGGCGCCGACACAGGACCGGGTTATCGCACGGTTGCTGACCGACGA
CATCGTCGAATGGCGGATTCCGCCGGGATCGTGGCTGCGCGAGCGTGAGATTGCGGCGCGCTTTGGAGTCAGTCACGCAC
CCGTTCGCGAAGCCTTTCGGCATCTCGCGAGCATCGGGCTGGTCAAGGTCGTGCCCTGGCGCGGCGCTTATGCGATCGAC
GTCGACGACCATGGGGCGGATGAGGTCTACGAGCTGTGGAAAGCGCTCTTCGGGGTCGTTTGCCGCCTCGCGTGCACGGC
GATGAGCGACCGCGACGGGCGCGAGCTGATGCACCGGCTGATCGAATATAAGGATGTGACCGAACGAACCACCAATTCCG
CCGAGCATCTCAGGGTCTCGAACCGGATCGGGCGATTCATCGCCAAGCGATCGAATGCGCCGATGGCGCTCGAGTTGCTC
GACCGGCTGGCGCTGCTCGCGCGCTGGCAGCACAATGTCTACACCGACGAGTTTGTCGCGACGCACGGCGAGGGCGAGGT
TGGCCGCCGGTCGGCGGTGCTCTATGAGCAGCTTTGCCGGCATATCGTCGCGCGCGAACCCGACGACGCCGACCGCGTCG
CGCGCGACCTGATTGCCACATCGCAACAGAATTTCGCCGAGGCGCTGGCGGAATATAAGGCACGGCGGACCAAGGCAAAG
CCTGGCCGTCGCCGCGCCCGCGCGTCGTGA

Upstream 100 bases:

>100_bases
GTTTTTATCATTATTATCGATAATATTCCGAACTTCAATGATCGTTTGCTCCCGTGTTTTCCCGATCTAGGATGGCACCG
GCAGACAGGGAGCCGAACGG

Downstream 100 bases:

>100_bases
CGCGGGGTTATGCCGGCCGGCGGAGCCTGCTGAAGGCAGGGCTTGCGGCGCCGATCGCTTTTCAGGCTGCTCCCGCCTTC
GCCGCTGGGGGCGATGATGC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; GntR Family Regulatory Protein; Transcriptional Regulator

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MEMAATKTDDEQAPTQDRVIARLLTDDIVEWRIPPGSWLREREIAARFGVSHAPVREAFRHLASIGLVKVVPWRGAYAID
VDDHGADEVYELWKALFGVVCRLACTAMSDRDGRELMHRLIEYKDVTERTTNSAEHLRVSNRIGRFIAKRSNAPMALELL
DRLALLARWQHNVYTDEFVATHGEGEVGRRSAVLYEQLCRHIVAREPDDADRVARDLIATSQQNFAEALAEYKARRTKAK
PGRRRARAS

Sequences:

>Translated_249_residues
MEMAATKTDDEQAPTQDRVIARLLTDDIVEWRIPPGSWLREREIAARFGVSHAPVREAFRHLASIGLVKVVPWRGAYAID
VDDHGADEVYELWKALFGVVCRLACTAMSDRDGRELMHRLIEYKDVTERTTNSAEHLRVSNRIGRFIAKRSNAPMALELL
DRLALLARWQHNVYTDEFVATHGEGEVGRRSAVLYEQLCRHIVAREPDDADRVARDLIATSQQNFAEALAEYKARRTKAK
PGRRRARAS
>Mature_249_residues
MEMAATKTDDEQAPTQDRVIARLLTDDIVEWRIPPGSWLREREIAARFGVSHAPVREAFRHLASIGLVKVVPWRGAYAID
VDDHGADEVYELWKALFGVVCRLACTAMSDRDGRELMHRLIEYKDVTERTTNSAEHLRVSNRIGRFIAKRSNAPMALELL
DRLALLARWQHNVYTDEFVATHGEGEVGRRSAVLYEQLCRHIVAREPDDADRVARDLIATSQQNFAEALAEYKARRTKAK
PGRRRARAS

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787821, Length=118, Percent_Identity=34.7457627118644, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28358; Mature: 28358

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEMAATKTDDEQAPTQDRVIARLLTDDIVEWRIPPGSWLREREIAARFGVSHAPVREAFR
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHH
HLASIGLVKVVPWRGAYAIDVDDHGADEVYELWKALFGVVCRLACTAMSDRDGRELMHRL
HHHHHCHHEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
IEYKDVTERTTNSAEHLRVSNRIGRFIAKRSNAPMALELLDRLALLARWQHNVYTDEFVA
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH
THGEGEVGRRSAVLYEQLCRHIVAREPDDADRVARDLIATSQQNFAEALAEYKARRTKAK
CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PGRRRARAS
CCHHHCCCC
>Mature Secondary Structure
MEMAATKTDDEQAPTQDRVIARLLTDDIVEWRIPPGSWLREREIAARFGVSHAPVREAFR
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHH
HLASIGLVKVVPWRGAYAIDVDDHGADEVYELWKALFGVVCRLACTAMSDRDGRELMHRL
HHHHHCHHEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
IEYKDVTERTTNSAEHLRVSNRIGRFIAKRSNAPMALELLDRLALLARWQHNVYTDEFVA
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH
THGEGEVGRRSAVLYEQLCRHIVAREPDDADRVARDLIATSQQNFAEALAEYKARRTKAK
CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PGRRRARAS
CCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA