| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is 103487644
Identifier: 103487644
GI number: 103487644
Start: 2274208
End: 2274792
Strand: Direct
Name: 103487644
Synonym: Sala_2163
Alternate gene names: NA
Gene position: 2274208-2274792 (Clockwise)
Preceding gene: 103487643
Following gene: 103487645
Centisome position: 67.98
GC content: 66.15
Gene sequence:
>585_bases TTGCGCCTAGACCAACCGCGCATCGAGCCGGTCGATCTGGACCGGCTCGATGCCGACCAGCGCACCGCGCTAGACCCCTT CCTCGCCAGCGATGGCGGCAAGGTCGGGGGCGGCAAGATCCTCAACATCTTCCGCACGCTGGCGCATGCGCCCAGGGCGC TCACGGCCTTCCTCGCGTGGGGCAACTATATCCTGTCGCGGCGCAATGCGCTGAGCCCACGGAATCGCGAACTCGTCATC CTGCGCACCGGCTTTAACTGCCGTTCGGGTTACGAGTGGACGCAGCACAGGCGCATCGGGCTCGATTGCGGATTGAGCGA GGACGAGATCGCCCGGATCAAGGCGGGACCCGACGCGGGCGGCTGGAACGACCTCGACCGCGCCATGCTGCGCGCGACCG ACGAACTCACCGCCGACCATTTCGTCAGCGACACGACCTGGGCCGCGCTCGCGCCGCTCGGCGACAAGGGACGGATGGAC CTGGTGATGACGGTGGGGCAATATACGCAGGTCTCGATGATCCTGAACAGCTTCGGCATTCAGGTCGAGGAAGGATGGGA GGTCGACCCCGACCTCAAGGCCTGA
Upstream 100 bases:
>100_bases GCGCTGATCGAAGGCAAGCGCCGCGGCGTGAAGTACGCCGTCGTGACAATGTGCATCGGCGGCGGCCAGGGCGCGGCAGG CCTGTTCGAGGTCTTCTGAT
Downstream 100 bases:
>100_bases CGGGAAGGAAGAAGCACATGACTGCCATCGGCATTATCGCCACGCTGCGCGTGCAGCCGGGCAAGGAAGAGGCGTTCGAA GGCGTCTTCGCCGAACTCGC
Product: carboxymuconolactone decarboxylase
Products: NA
Alternate protein names: Alkylhydroperoxidase; Alkylhydroperoxidase Like Protein; Carboxymuconolactone Decarboxylase Protein; 4-Carboxymuconolactone Decarboxylase
Number of amino acids: Translated: 194; Mature: 194
Protein sequence:
>194_residues MRLDQPRIEPVDLDRLDADQRTALDPFLASDGGKVGGGKILNIFRTLAHAPRALTAFLAWGNYILSRRNALSPRNRELVI LRTGFNCRSGYEWTQHRRIGLDCGLSEDEIARIKAGPDAGGWNDLDRAMLRATDELTADHFVSDTTWAALAPLGDKGRMD LVMTVGQYTQVSMILNSFGIQVEEGWEVDPDLKA
Sequences:
>Translated_194_residues MRLDQPRIEPVDLDRLDADQRTALDPFLASDGGKVGGGKILNIFRTLAHAPRALTAFLAWGNYILSRRNALSPRNRELVI LRTGFNCRSGYEWTQHRRIGLDCGLSEDEIARIKAGPDAGGWNDLDRAMLRATDELTADHFVSDTTWAALAPLGDKGRMD LVMTVGQYTQVSMILNSFGIQVEEGWEVDPDLKA >Mature_194_residues MRLDQPRIEPVDLDRLDADQRTALDPFLASDGGKVGGGKILNIFRTLAHAPRALTAFLAWGNYILSRRNALSPRNRELVI LRTGFNCRSGYEWTQHRRIGLDCGLSEDEIARIKAGPDAGGWNDLDRAMLRATDELTADHFVSDTTWAALAPLGDKGRMD LVMTVGQYTQVSMILNSFGIQVEEGWEVDPDLKA
Specific function: Unknown
COG id: COG2128
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21554; Mature: 21554
Theoretical pI: Translated: 5.07; Mature: 5.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLDQPRIEPVDLDRLDADQRTALDPFLASDGGKVGGGKILNIFRTLAHAPRALTAFLAW CCCCCCCCCCCCCCCCCCCCHHHCCCHHHCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHH GNYILSRRNALSPRNRELVILRTGFNCRSGYEWTQHRRIGLDCGLSEDEIARIKAGPDAG HHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCHHHCCEECCCCCCCHHHEEEEECCCCCC GWNDLDRAMLRATDELTADHFVSDTTWAALAPLGDKGRMDLVMTVGQYTQVSMILNSFGI CCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCEEEEEECCCHHHHHHHHHHHCC QVEEGWEVDPDLKA EECCCCCCCCCCCC >Mature Secondary Structure MRLDQPRIEPVDLDRLDADQRTALDPFLASDGGKVGGGKILNIFRTLAHAPRALTAFLAW CCCCCCCCCCCCCCCCCCCCHHHCCCHHHCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHH GNYILSRRNALSPRNRELVILRTGFNCRSGYEWTQHRRIGLDCGLSEDEIARIKAGPDAG HHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCHHHCCEECCCCCCCHHHEEEEECCCCCC GWNDLDRAMLRATDELTADHFVSDTTWAALAPLGDKGRMDLVMTVGQYTQVSMILNSFGI CCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCEEEEEECCCHHHHHHHHHHHCC QVEEGWEVDPDLKA EECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA