Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

Click here to switch to the map view.

The map label for this gene is usg [H]

Identifier: 103487557

GI number: 103487557

Start: 2182334

End: 2182603

Strand: Reverse

Name: usg [H]

Synonym: Sala_2076

Alternate gene names: 103487557

Gene position: 2182603-2182334 (Counterclockwise)

Preceding gene: 103487558

Following gene: 103487552

Centisome position: 65.25

GC content: 61.48

Gene sequence:

>270_bases
ATGAGCGATTCCGCATTGGCCAGGCAACTGCGGGGCTATGGCCTGACCACGGCCGAAATTCACTATTACCGGCCCGATCA
TCCCTCGCTTCTGCAGCTTTTTGTCTGGCAGGAATATGACCTCGCGCCCGACTTCCCGGTGCTGTTCGATTTTCTCGATC
ATTGGCGGCGCGAGATCGAGGCCGCGCTCCATTCGGTGCGGATCGCGCACGAGCGATTGGTCCGTCCGGCCGAATGGCGC
GCGGTCGACGGTGTCATCGCGATCCAGTGA

Upstream 100 bases:

>100_bases
TGCGTCGGCCGCCTGGCGCCTATCGCGCCCGCACGACGCGCGACGTGCAGGCGGCGCTGCGGATGATCGATGGCAGGAGC
GGGGGGCGACCGCGACCCCA

Downstream 100 bases:

>100_bases
GCGATGCCGCGGTGCGCCGGAAAGCGTATCGCGCGCCGTCGTCGTTCTGCGCCGCATATCGCCCCGCGACCGGATAGTGT
CCGCAACACAGCGGATGCGG

Product: Usg-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 89; Mature: 88

Protein sequence:

>89_residues
MSDSALARQLRGYGLTTAEIHYYRPDHPSLLQLFVWQEYDLAPDFPVLFDFLDHWRREIEAALHSVRIAHERLVRPAEWR
AVDGVIAIQ

Sequences:

>Translated_89_residues
MSDSALARQLRGYGLTTAEIHYYRPDHPSLLQLFVWQEYDLAPDFPVLFDFLDHWRREIEAALHSVRIAHERLVRPAEWR
AVDGVIAIQ
>Mature_88_residues
SDSALARQLRGYGLTTAEIHYYRPDHPSLLQLFVWQEYDLAPDFPVLFDFLDHWRREIEAALHSVRIAHERLVRPAEWRA
VDGVIAIQ

Specific function: Probably necessary for the cotranslation of trpF. It may also function as a subunit or stabilizer of phosphoribosylanthranilate isomerase (trpF) [H]

COG id: COG5425

COG function: function code E; Usg protein, probable subunit of phosphoribosylanthranilate isomerase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009354 [H]

Pfam domain/function: PF06233 Usg [H]

EC number: NA

Molecular weight: Translated: 10457; Mature: 10326

Theoretical pI: Translated: 5.97; Mature: 5.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDSALARQLRGYGLTTAEIHYYRPDHPSLLQLFVWQEYDLAPDFPVLFDFLDHWRREIE
CCHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
AALHSVRIAHERLVRPAEWRAVDGVIAIQ
HHHHHHHHHHHHHCCCCCCCCCCCEEEEC
>Mature Secondary Structure 
SDSALARQLRGYGLTTAEIHYYRPDHPSLLQLFVWQEYDLAPDFPVLFDFLDHWRREIE
CHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
AALHSVRIAHERLVRPAEWRAVDGVIAIQ
HHHHHHHHHHHHHCCCCCCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2828322; 11259647 [H]