Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is usg [H]
Identifier: 103487557
GI number: 103487557
Start: 2182334
End: 2182603
Strand: Reverse
Name: usg [H]
Synonym: Sala_2076
Alternate gene names: 103487557
Gene position: 2182603-2182334 (Counterclockwise)
Preceding gene: 103487558
Following gene: 103487552
Centisome position: 65.25
GC content: 61.48
Gene sequence:
>270_bases ATGAGCGATTCCGCATTGGCCAGGCAACTGCGGGGCTATGGCCTGACCACGGCCGAAATTCACTATTACCGGCCCGATCA TCCCTCGCTTCTGCAGCTTTTTGTCTGGCAGGAATATGACCTCGCGCCCGACTTCCCGGTGCTGTTCGATTTTCTCGATC ATTGGCGGCGCGAGATCGAGGCCGCGCTCCATTCGGTGCGGATCGCGCACGAGCGATTGGTCCGTCCGGCCGAATGGCGC GCGGTCGACGGTGTCATCGCGATCCAGTGA
Upstream 100 bases:
>100_bases TGCGTCGGCCGCCTGGCGCCTATCGCGCCCGCACGACGCGCGACGTGCAGGCGGCGCTGCGGATGATCGATGGCAGGAGC GGGGGGCGACCGCGACCCCA
Downstream 100 bases:
>100_bases GCGATGCCGCGGTGCGCCGGAAAGCGTATCGCGCGCCGTCGTCGTTCTGCGCCGCATATCGCCCCGCGACCGGATAGTGT CCGCAACACAGCGGATGCGG
Product: Usg-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 89; Mature: 88
Protein sequence:
>89_residues MSDSALARQLRGYGLTTAEIHYYRPDHPSLLQLFVWQEYDLAPDFPVLFDFLDHWRREIEAALHSVRIAHERLVRPAEWR AVDGVIAIQ
Sequences:
>Translated_89_residues MSDSALARQLRGYGLTTAEIHYYRPDHPSLLQLFVWQEYDLAPDFPVLFDFLDHWRREIEAALHSVRIAHERLVRPAEWR AVDGVIAIQ >Mature_88_residues SDSALARQLRGYGLTTAEIHYYRPDHPSLLQLFVWQEYDLAPDFPVLFDFLDHWRREIEAALHSVRIAHERLVRPAEWRA VDGVIAIQ
Specific function: Probably necessary for the cotranslation of trpF. It may also function as a subunit or stabilizer of phosphoribosylanthranilate isomerase (trpF) [H]
COG id: COG5425
COG function: function code E; Usg protein, probable subunit of phosphoribosylanthranilate isomerase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009354 [H]
Pfam domain/function: PF06233 Usg [H]
EC number: NA
Molecular weight: Translated: 10457; Mature: 10326
Theoretical pI: Translated: 5.97; Mature: 5.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDSALARQLRGYGLTTAEIHYYRPDHPSLLQLFVWQEYDLAPDFPVLFDFLDHWRREIE CCHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH AALHSVRIAHERLVRPAEWRAVDGVIAIQ HHHHHHHHHHHHHCCCCCCCCCCCEEEEC >Mature Secondary Structure SDSALARQLRGYGLTTAEIHYYRPDHPSLLQLFVWQEYDLAPDFPVLFDFLDHWRREIE CHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH AALHSVRIAHERLVRPAEWRAVDGVIAIQ HHHHHHHHHHHHHCCCCCCCCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2828322; 11259647 [H]