Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is yhbJ [C]

Identifier: 103487531

GI number: 103487531

Start: 2160777

End: 2161727

Strand: Direct

Name: yhbJ [C]

Synonym: Sala_2050

Alternate gene names: 103487531

Gene position: 2160777-2161727 (Clockwise)

Preceding gene: 103487530

Following gene: 103487532

Centisome position: 64.59

GC content: 68.14

Gene sequence:

>951_bases
ATGAGCGGACAGGCGAGTCCGGGCGCCGAGTCGCGGCTGCTGCTCGTCACCGGCCTGTCGGGCGCGGGCAAGTCGACGGT
GCTGAAGGTGCTCGAGGATCTGGGCTGGGAAGTAGTCGACAATTTGCCGCTCGCGCTGCTCGAAGCGCTGATCGACGCGC
CGGTGAAGCGCGGCGAGGCGGAGCGTCCGCTCGCGGTCGGAATCGACAGCCGCAGCCGGGGGTTTCGCCCGGCGCTGCTC
GTGCGGCGGATCAAGGAATTGCGCGAAGGCGGCGGTCGCGACATCCAGACGCTGTTCCTCGATTGCGCGGGCGCGGAGCT
TGAACGGCGCTTTTCCGAAACGCGCCGCCGCCACCCGCTCGCCGAGGACCGCCCCGCCGCCGACGGGATCGCGCGCGAGC
GCGAGATGATGGAGCCGCTGCGCCGCTGGGCCGAGCATGTCGTCGATACCACCAACTACAGCAGCAATGATTTGCAGCAG
GAGGTGCGCCAGCGTTTCGGCGAGGCGGACGACGGCGAACCGGTGCTGAACATATTGAGCTTCGGCTTCGCGCGCGGGCT
GCCGCGCAACGCCGATCTGGTGTTCGACATGCGCTATCTGCGCAACCCGCACTGGGACCCGGCGCTCAAGCCGGGCACGG
GGCTCGATCCCGACGTCGCCGCCTATGTCATCGCCGACCCCGCCTATGAAGAAACGGTTTCGCAGATCGAGCGACTGATC
CTGACGCTGCTGCCGCGCTACCGCGCCGAAGGCAAAAGCTATGTGACCATCGCGTTCGGCTGCACCGGCGGGCGTCACCG
CTCGGTCCATGTCGCCGCACGTGTTGCGCAAACGCTACGCGGATCGGGATATGAGCCGACGCTGACCCACCGCAATCTTG
ACTCTGCCCCGCAAGATGGGCTTGAGGGCAAGCCCCCGTCCGCCGCCCGCGCATCGGGCGGCGCAAGATAA

Upstream 100 bases:

>100_bases
CGGTGGCGGGCCATCCGCTTCCCGCGCTGCTGCTGTCGGCGTTCGAGGTGTCGGCGCCGATCAAGATCATGCTCGCGCTC
GAACGGCTGGCGCCCGCGGC

Downstream 100 bases:

>100_bases
GGGTCGATCACTGCATGCCGAATGACAAGGCTCTGCCGCTCTTGGGAATGGTGCTCGTCACGCACGGCCGCCTCGCCGAG
GAAATGGTGCGCGCGATGGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 315

Protein sequence:

>316_residues
MSGQASPGAESRLLLVTGLSGAGKSTVLKVLEDLGWEVVDNLPLALLEALIDAPVKRGEAERPLAVGIDSRSRGFRPALL
VRRIKELREGGGRDIQTLFLDCAGAELERRFSETRRRHPLAEDRPAADGIAREREMMEPLRRWAEHVVDTTNYSSNDLQQ
EVRQRFGEADDGEPVLNILSFGFARGLPRNADLVFDMRYLRNPHWDPALKPGTGLDPDVAAYVIADPAYEETVSQIERLI
LTLLPRYRAEGKSYVTIAFGCTGGRHRSVHVAARVAQTLRGSGYEPTLTHRNLDSAPQDGLEGKPPSAARASGGAR

Sequences:

>Translated_316_residues
MSGQASPGAESRLLLVTGLSGAGKSTVLKVLEDLGWEVVDNLPLALLEALIDAPVKRGEAERPLAVGIDSRSRGFRPALL
VRRIKELREGGGRDIQTLFLDCAGAELERRFSETRRRHPLAEDRPAADGIAREREMMEPLRRWAEHVVDTTNYSSNDLQQ
EVRQRFGEADDGEPVLNILSFGFARGLPRNADLVFDMRYLRNPHWDPALKPGTGLDPDVAAYVIADPAYEETVSQIERLI
LTLLPRYRAEGKSYVTIAFGCTGGRHRSVHVAARVAQTLRGSGYEPTLTHRNLDSAPQDGLEGKPPSAARASGGAR
>Mature_315_residues
SGQASPGAESRLLLVTGLSGAGKSTVLKVLEDLGWEVVDNLPLALLEALIDAPVKRGEAERPLAVGIDSRSRGFRPALLV
RRIKELREGGGRDIQTLFLDCAGAELERRFSETRRRHPLAEDRPAADGIAREREMMEPLRRWAEHVVDTTNYSSNDLQQE
VRQRFGEADDGEPVLNILSFGFARGLPRNADLVFDMRYLRNPHWDPALKPGTGLDPDVAAYVIADPAYEETVSQIERLIL
TLLPRYRAEGKSYVTIAFGCTGGRHRSVHVAARVAQTLRGSGYEPTLTHRNLDSAPQDGLEGKPPSAARASGGAR

Specific function: Displays ATPase and GTPase activities

COG id: COG1660

COG function: function code R; Predicted P-loop-containing kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0042 family

Homologues:

Organism=Escherichia coli, GI1789598, Length=285, Percent_Identity=39.2982456140351, Blast_Score=194, Evalue=6e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2050_SPHAL (Q1GRG3)

Other databases:

- EMBL:   CP000356
- RefSeq:   YP_617092.1
- ProteinModelPortal:   Q1GRG3
- GeneID:   4080117
- GenomeReviews:   CP000356_GR
- KEGG:   sal:Sala_2050
- NMPDR:   fig|317655.9.peg.1981
- HOGENOM:   HBG289732
- OMA:   GIGCTGG
- ProtClustDB:   PRK05416
- BioCyc:   SALA317655:SALA_2050-MONOMER
- HAMAP:   MF_00636
- InterPro:   IPR005337
- PIRSF:   PIRSF005052

Pfam domain/function: PF03668 ATP_bind_2

EC number: NA

Molecular weight: Translated: 34679; Mature: 34547

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGQASPGAESRLLLVTGLSGAGKSTVLKVLEDLGWEVVDNLPLALLEALIDAPVKRGEA
CCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCHHHHHCCHHHHHHHHHHHHHHCCCC
ERPLAVGIDSRSRGFRPALLVRRIKELREGGGRDIQTLFLDCAGAELERRFSETRRRHPL
CCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCC
AEDRPAADGIAREREMMEPLRRWAEHVVDTTNYSSNDLQQEVRQRFGEADDGEPVLNILS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHH
FGFARGLPRNADLVFDMRYLRNPHWDPALKPGTGLDPDVAAYVIADPAYEETVSQIERLI
HHHHCCCCCCCCCEEEHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHH
LTLLPRYRAEGKSYVTIAFGCTGGRHRSVHVAARVAQTLRGSGYEPTLTHRNLDSAPQDG
HHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
LEGKPPSAARASGGAR
CCCCCCCHHCCCCCCC
>Mature Secondary Structure 
SGQASPGAESRLLLVTGLSGAGKSTVLKVLEDLGWEVVDNLPLALLEALIDAPVKRGEA
CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCHHHHHCCHHHHHHHHHHHHHHCCCC
ERPLAVGIDSRSRGFRPALLVRRIKELREGGGRDIQTLFLDCAGAELERRFSETRRRHPL
CCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCC
AEDRPAADGIAREREMMEPLRRWAEHVVDTTNYSSNDLQQEVRQRFGEADDGEPVLNILS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHH
FGFARGLPRNADLVFDMRYLRNPHWDPALKPGTGLDPDVAAYVIADPAYEETVSQIERLI
HHHHCCCCCCCCCEEEHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHH
LTLLPRYRAEGKSYVTIAFGCTGGRHRSVHVAARVAQTLRGSGYEPTLTHRNLDSAPQDG
HHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
LEGKPPSAARASGGAR
CCCCCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA