| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is yhbJ [C]
Identifier: 103487531
GI number: 103487531
Start: 2160777
End: 2161727
Strand: Direct
Name: yhbJ [C]
Synonym: Sala_2050
Alternate gene names: 103487531
Gene position: 2160777-2161727 (Clockwise)
Preceding gene: 103487530
Following gene: 103487532
Centisome position: 64.59
GC content: 68.14
Gene sequence:
>951_bases ATGAGCGGACAGGCGAGTCCGGGCGCCGAGTCGCGGCTGCTGCTCGTCACCGGCCTGTCGGGCGCGGGCAAGTCGACGGT GCTGAAGGTGCTCGAGGATCTGGGCTGGGAAGTAGTCGACAATTTGCCGCTCGCGCTGCTCGAAGCGCTGATCGACGCGC CGGTGAAGCGCGGCGAGGCGGAGCGTCCGCTCGCGGTCGGAATCGACAGCCGCAGCCGGGGGTTTCGCCCGGCGCTGCTC GTGCGGCGGATCAAGGAATTGCGCGAAGGCGGCGGTCGCGACATCCAGACGCTGTTCCTCGATTGCGCGGGCGCGGAGCT TGAACGGCGCTTTTCCGAAACGCGCCGCCGCCACCCGCTCGCCGAGGACCGCCCCGCCGCCGACGGGATCGCGCGCGAGC GCGAGATGATGGAGCCGCTGCGCCGCTGGGCCGAGCATGTCGTCGATACCACCAACTACAGCAGCAATGATTTGCAGCAG GAGGTGCGCCAGCGTTTCGGCGAGGCGGACGACGGCGAACCGGTGCTGAACATATTGAGCTTCGGCTTCGCGCGCGGGCT GCCGCGCAACGCCGATCTGGTGTTCGACATGCGCTATCTGCGCAACCCGCACTGGGACCCGGCGCTCAAGCCGGGCACGG GGCTCGATCCCGACGTCGCCGCCTATGTCATCGCCGACCCCGCCTATGAAGAAACGGTTTCGCAGATCGAGCGACTGATC CTGACGCTGCTGCCGCGCTACCGCGCCGAAGGCAAAAGCTATGTGACCATCGCGTTCGGCTGCACCGGCGGGCGTCACCG CTCGGTCCATGTCGCCGCACGTGTTGCGCAAACGCTACGCGGATCGGGATATGAGCCGACGCTGACCCACCGCAATCTTG ACTCTGCCCCGCAAGATGGGCTTGAGGGCAAGCCCCCGTCCGCCGCCCGCGCATCGGGCGGCGCAAGATAA
Upstream 100 bases:
>100_bases CGGTGGCGGGCCATCCGCTTCCCGCGCTGCTGCTGTCGGCGTTCGAGGTGTCGGCGCCGATCAAGATCATGCTCGCGCTC GAACGGCTGGCGCCCGCGGC
Downstream 100 bases:
>100_bases GGGTCGATCACTGCATGCCGAATGACAAGGCTCTGCCGCTCTTGGGAATGGTGCTCGTCACGCACGGCCGCCTCGCCGAG GAAATGGTGCGCGCGATGGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 316; Mature: 315
Protein sequence:
>316_residues MSGQASPGAESRLLLVTGLSGAGKSTVLKVLEDLGWEVVDNLPLALLEALIDAPVKRGEAERPLAVGIDSRSRGFRPALL VRRIKELREGGGRDIQTLFLDCAGAELERRFSETRRRHPLAEDRPAADGIAREREMMEPLRRWAEHVVDTTNYSSNDLQQ EVRQRFGEADDGEPVLNILSFGFARGLPRNADLVFDMRYLRNPHWDPALKPGTGLDPDVAAYVIADPAYEETVSQIERLI LTLLPRYRAEGKSYVTIAFGCTGGRHRSVHVAARVAQTLRGSGYEPTLTHRNLDSAPQDGLEGKPPSAARASGGAR
Sequences:
>Translated_316_residues MSGQASPGAESRLLLVTGLSGAGKSTVLKVLEDLGWEVVDNLPLALLEALIDAPVKRGEAERPLAVGIDSRSRGFRPALL VRRIKELREGGGRDIQTLFLDCAGAELERRFSETRRRHPLAEDRPAADGIAREREMMEPLRRWAEHVVDTTNYSSNDLQQ EVRQRFGEADDGEPVLNILSFGFARGLPRNADLVFDMRYLRNPHWDPALKPGTGLDPDVAAYVIADPAYEETVSQIERLI LTLLPRYRAEGKSYVTIAFGCTGGRHRSVHVAARVAQTLRGSGYEPTLTHRNLDSAPQDGLEGKPPSAARASGGAR >Mature_315_residues SGQASPGAESRLLLVTGLSGAGKSTVLKVLEDLGWEVVDNLPLALLEALIDAPVKRGEAERPLAVGIDSRSRGFRPALLV RRIKELREGGGRDIQTLFLDCAGAELERRFSETRRRHPLAEDRPAADGIAREREMMEPLRRWAEHVVDTTNYSSNDLQQE VRQRFGEADDGEPVLNILSFGFARGLPRNADLVFDMRYLRNPHWDPALKPGTGLDPDVAAYVIADPAYEETVSQIERLIL TLLPRYRAEGKSYVTIAFGCTGGRHRSVHVAARVAQTLRGSGYEPTLTHRNLDSAPQDGLEGKPPSAARASGGAR
Specific function: Displays ATPase and GTPase activities
COG id: COG1660
COG function: function code R; Predicted P-loop-containing kinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0042 family
Homologues:
Organism=Escherichia coli, GI1789598, Length=285, Percent_Identity=39.2982456140351, Blast_Score=194, Evalue=6e-51,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y2050_SPHAL (Q1GRG3)
Other databases:
- EMBL: CP000356 - RefSeq: YP_617092.1 - ProteinModelPortal: Q1GRG3 - GeneID: 4080117 - GenomeReviews: CP000356_GR - KEGG: sal:Sala_2050 - NMPDR: fig|317655.9.peg.1981 - HOGENOM: HBG289732 - OMA: GIGCTGG - ProtClustDB: PRK05416 - BioCyc: SALA317655:SALA_2050-MONOMER - HAMAP: MF_00636 - InterPro: IPR005337 - PIRSF: PIRSF005052
Pfam domain/function: PF03668 ATP_bind_2
EC number: NA
Molecular weight: Translated: 34679; Mature: 34547
Theoretical pI: Translated: 6.81; Mature: 6.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGQASPGAESRLLLVTGLSGAGKSTVLKVLEDLGWEVVDNLPLALLEALIDAPVKRGEA CCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCHHHHHCCHHHHHHHHHHHHHHCCCC ERPLAVGIDSRSRGFRPALLVRRIKELREGGGRDIQTLFLDCAGAELERRFSETRRRHPL CCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCC AEDRPAADGIAREREMMEPLRRWAEHVVDTTNYSSNDLQQEVRQRFGEADDGEPVLNILS CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHH FGFARGLPRNADLVFDMRYLRNPHWDPALKPGTGLDPDVAAYVIADPAYEETVSQIERLI HHHHCCCCCCCCCEEEHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHH LTLLPRYRAEGKSYVTIAFGCTGGRHRSVHVAARVAQTLRGSGYEPTLTHRNLDSAPQDG HHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC LEGKPPSAARASGGAR CCCCCCCHHCCCCCCC >Mature Secondary Structure SGQASPGAESRLLLVTGLSGAGKSTVLKVLEDLGWEVVDNLPLALLEALIDAPVKRGEA CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCHHHHHCCHHHHHHHHHHHHHHCCCC ERPLAVGIDSRSRGFRPALLVRRIKELREGGGRDIQTLFLDCAGAELERRFSETRRRHPL CCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCC AEDRPAADGIAREREMMEPLRRWAEHVVDTTNYSSNDLQQEVRQRFGEADDGEPVLNILS CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHH FGFARGLPRNADLVFDMRYLRNPHWDPALKPGTGLDPDVAAYVIADPAYEETVSQIERLI HHHHCCCCCCCCCEEEHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHH LTLLPRYRAEGKSYVTIAFGCTGGRHRSVHVAARVAQTLRGSGYEPTLTHRNLDSAPQDG HHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC LEGKPPSAARASGGAR CCCCCCCHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA