Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103487525

Identifier: 103487525

GI number: 103487525

Start: 2153741

End: 2155585

Strand: Direct

Name: 103487525

Synonym: Sala_2044

Alternate gene names: NA

Gene position: 2153741-2155585 (Clockwise)

Preceding gene: 103487524

Following gene: 103487528

Centisome position: 64.38

GC content: 69.54

Gene sequence:

>1845_bases
GTGCATCATCCGCTTTCCGTCCCCGTCAGCCGCCGCCACACGCTCGCCGCCCTTGGCGCGGGCACCGCGGGCATTGCCCT
CGCCGGCCCCGCCGCGGCGTTGCAGGACGCGCCCGGCAGCGGCGCGCAGCTCCTGCTCGATTCGGTCGCCGACAATCTGC
TCGCCCACTCGCCCGAAGGCGCAACCTCGCTCGGCATCGACACCGGCGCGCGCGCGGCGATGCGCGGCAAGCTGGCGGAC
CGTTCGGCCGCGGGGGTGGCGGCGCTCGCCGACACGCTCAAAGCCGACGTCGCGCGCGTCCGCGCCTTCGACAAGGCGGG
GCTCGACCATCAGGCGCGCACCAGCCTCGCCGTCGTCGAAAGCGCCTATGACGTCGCGCTCGCGGGCTTTGCGCTGCCCT
ATGGCGACGTCGCGGTCGGCGGCTGGCGCAACACCCCCTATGTGGTGATCCAGAATGTCGGCGCCTATCTCGACATTCCG
AAGTTCCTCGACAGCGACCATCCGGTGAAGACGTCGGCCGACGCCGAGGCCTATCTCGCGCGCCTCGGCGCCTTTCCCGG
CGTGCTCGACGGCGAGACCGAACGGATGAAGGCCGCGGCCGCGCAGGGGCTGATCGCCCCCGCCTTCCTGATCGACAAGG
CGGTGGGGCAGATGGAGGCGAGCCTCGCAGATGCGAAGGCGGGCGGGTCGATGGTCGAAAGCCTGAACCGCCGCGCGGCC
GCCGCCGAGCTGAACGGCGACTGGGGCGCGCGCGCGGCGAAGATCGTGCAGGGTCCGGTCGCCGCCGCGCTCGAACGCCA
GCTCGCCGAGATGAAGGCGCAGCGGCCGAAGGCGACGATGGACGCGGGCCTGTGGGCGCGCCCCGGCGGCGACGAATGGT
ATGCGTGGGGGCTGCGCGCCTCGACCACCACGCGCATGACCCCCGACGAGATTCACGAAATGGGGCGGCAGGAGCTGGCC
GAACTCCACGGCCGCATGGACCCGATCCTGAAAAAGCTGGGCTATACGCAAGGCAGCGTCGGCGACCGGATGAACGCGCT
CGCCAGGGATCCGCGGTACAAATTTCCCGACAATGATGCGGGCCGCGCCGAAATCCTCGCCTATATCCAGACCTGGCTCG
GCAAGATCCGCGCCGAACTGCCGCGCGCCTTCCGCACCCTGGTGAAGGGCAATGTCGAGGTGAAGCGGCTGCCGCTCGCC
GAGGAACCCGGCGCGCCCGCCGCCTATGGCGGCGCGGGGTCGATCGACGGCAGCATTCCGGGACGTTTCTGGATCAACCT
GCGCACCACCGAACTGCACAGCAAATACTCCCTCCCCGACCTCACCATGCACGAGGCGATCCCCGGCCACGCCTGGCAGG
GCGAATATGCGCATTCGATGCCGCTGATCCGCACGATGCTGGCGTTCAACGCCTATTCGGAAGGCTGGGCGCTTTACGCC
GAACAGCTCGCCGACGAGCTGGGCCTCTATGACGATTTCGAGGTCGGGCGCCTCGGCTATCTCCAGTCGCTCGCCTTCCG
CGCCTGCCGCCTCGTCGTCGACACCGGGCTGCACGCGAAACGCTGGACGCGCGAGCAGGGCGTGCGCTTTTTCGTCGAGG
AAAATGGCTCGAACCCGCTTGAGGTCGCGAGCGAGGTCGACCGCTATTGCAGCTGGGCGGGACAGGCGTGCGGATACAAG
GTCGGGCACAGCGAGATCGTGCGGCAACGCGGGCTGGCGCAGGCGGCGCTGGGTGCCCGCTATGACCTGCGCGATTTCAA
CGACGTGGTGCTGAAGGGCGGCAACGTCCCGCTCGACGTGCTCGCGCTGAACGTCGCGGAATATGTAGCCGGGGCGAAAG
GGTAG

Upstream 100 bases:

>100_bases
TCCCTGCAAGGCGAGAGGCTTTTCATGGCGTGGCATTGACCATCGCGCCCGGCCCCTTAGACAGGTTTCAACCGAAACAA
GTCGCGCAAGGGAGCCGCCA

Downstream 100 bases:

>100_bases
CCCCTCCCCGCATCGTCATTGCGAGCGCAGCGAAGCAATGACGATGCGGGGAAGCGGTGCGAGGTCGGGTTCGACAAACC
CCCGCCGCGCCGCGACCGAG

Product: twin-arginine translocation pathway signal

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 614; Mature: 614

Protein sequence:

>614_residues
MHHPLSVPVSRRHTLAALGAGTAGIALAGPAAALQDAPGSGAQLLLDSVADNLLAHSPEGATSLGIDTGARAAMRGKLAD
RSAAGVAALADTLKADVARVRAFDKAGLDHQARTSLAVVESAYDVALAGFALPYGDVAVGGWRNTPYVVIQNVGAYLDIP
KFLDSDHPVKTSADAEAYLARLGAFPGVLDGETERMKAAAAQGLIAPAFLIDKAVGQMEASLADAKAGGSMVESLNRRAA
AAELNGDWGARAAKIVQGPVAAALERQLAEMKAQRPKATMDAGLWARPGGDEWYAWGLRASTTTRMTPDEIHEMGRQELA
ELHGRMDPILKKLGYTQGSVGDRMNALARDPRYKFPDNDAGRAEILAYIQTWLGKIRAELPRAFRTLVKGNVEVKRLPLA
EEPGAPAAYGGAGSIDGSIPGRFWINLRTTELHSKYSLPDLTMHEAIPGHAWQGEYAHSMPLIRTMLAFNAYSEGWALYA
EQLADELGLYDDFEVGRLGYLQSLAFRACRLVVDTGLHAKRWTREQGVRFFVEENGSNPLEVASEVDRYCSWAGQACGYK
VGHSEIVRQRGLAQAALGARYDLRDFNDVVLKGGNVPLDVLALNVAEYVAGAKG

Sequences:

>Translated_614_residues
MHHPLSVPVSRRHTLAALGAGTAGIALAGPAAALQDAPGSGAQLLLDSVADNLLAHSPEGATSLGIDTGARAAMRGKLAD
RSAAGVAALADTLKADVARVRAFDKAGLDHQARTSLAVVESAYDVALAGFALPYGDVAVGGWRNTPYVVIQNVGAYLDIP
KFLDSDHPVKTSADAEAYLARLGAFPGVLDGETERMKAAAAQGLIAPAFLIDKAVGQMEASLADAKAGGSMVESLNRRAA
AAELNGDWGARAAKIVQGPVAAALERQLAEMKAQRPKATMDAGLWARPGGDEWYAWGLRASTTTRMTPDEIHEMGRQELA
ELHGRMDPILKKLGYTQGSVGDRMNALARDPRYKFPDNDAGRAEILAYIQTWLGKIRAELPRAFRTLVKGNVEVKRLPLA
EEPGAPAAYGGAGSIDGSIPGRFWINLRTTELHSKYSLPDLTMHEAIPGHAWQGEYAHSMPLIRTMLAFNAYSEGWALYA
EQLADELGLYDDFEVGRLGYLQSLAFRACRLVVDTGLHAKRWTREQGVRFFVEENGSNPLEVASEVDRYCSWAGQACGYK
VGHSEIVRQRGLAQAALGARYDLRDFNDVVLKGGNVPLDVLALNVAEYVAGAKG
>Mature_614_residues
MHHPLSVPVSRRHTLAALGAGTAGIALAGPAAALQDAPGSGAQLLLDSVADNLLAHSPEGATSLGIDTGARAAMRGKLAD
RSAAGVAALADTLKADVARVRAFDKAGLDHQARTSLAVVESAYDVALAGFALPYGDVAVGGWRNTPYVVIQNVGAYLDIP
KFLDSDHPVKTSADAEAYLARLGAFPGVLDGETERMKAAAAQGLIAPAFLIDKAVGQMEASLADAKAGGSMVESLNRRAA
AAELNGDWGARAAKIVQGPVAAALERQLAEMKAQRPKATMDAGLWARPGGDEWYAWGLRASTTTRMTPDEIHEMGRQELA
ELHGRMDPILKKLGYTQGSVGDRMNALARDPRYKFPDNDAGRAEILAYIQTWLGKIRAELPRAFRTLVKGNVEVKRLPLA
EEPGAPAAYGGAGSIDGSIPGRFWINLRTTELHSKYSLPDLTMHEAIPGHAWQGEYAHSMPLIRTMLAFNAYSEGWALYA
EQLADELGLYDDFEVGRLGYLQSLAFRACRLVVDTGLHAKRWTREQGVRFFVEENGSNPLEVASEVDRYCSWAGQACGYK
VGHSEIVRQRGLAQAALGARYDLRDFNDVVLKGGNVPLDVLALNVAEYVAGAKG

Specific function: Unknown

COG id: COG4805

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 65585; Mature: 65585

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHHPLSVPVSRRHTLAALGAGTAGIALAGPAAALQDAPGSGAQLLLDSVADNLLAHSPEG
CCCCCCCCCCCCHHHHHHCCCCCCEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC
ATSLGIDTGARAAMRGKLADRSAAGVAALADTLKADVARVRAFDKAGLDHQARTSLAVVE
CCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
SAYDVALAGFALPYGDVAVGGWRNTPYVVIQNVGAYLDIPKFLDSDHPVKTSADAEAYLA
HHHHHHHHHHCCCCCCEEECCCCCCCEEEEECCCCCCCCHHHHCCCCCCCCCCHHHHHHH
RLGAFPGVLDGETERMKAAAAQGLIAPAFLIDKAVGQMEASLADAKAGGSMVESLNRRAA
HHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
AAELNGDWGARAAKIVQGPVAAALERQLAEMKAQRPKATMDAGLWARPGGDEWYAWGLRA
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCEEEEEEEC
STTTRMTPDEIHEMGRQELAELHGRMDPILKKLGYTQGSVGDRMNALARDPRYKFPDNDA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCC
GRAEILAYIQTWLGKIRAELPRAFRTLVKGNVEVKRLPLAEEPGAPAAYGGAGSIDGSIP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC
GRFWINLRTTELHSKYSLPDLTMHEAIPGHAWQGEYAHSMPLIRTMLAFNAYSEGWALYA
CEEEEEEEEHHHHCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHH
EQLADELGLYDDFEVGRLGYLQSLAFRACRLVVDTGLHAKRWTREQGVRFFVEENGSNPL
HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCEEEEECCCCCHH
EVASEVDRYCSWAGQACGYKVGHSEIVRQRGLAQAALGARYDLRDFNDVVLKGGNVPLDV
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCHHHHHHCCCCCCCCCCHHEEECCCCCHHH
LALNVAEYVAGAKG
HHHHHHHHHCCCCC
>Mature Secondary Structure
MHHPLSVPVSRRHTLAALGAGTAGIALAGPAAALQDAPGSGAQLLLDSVADNLLAHSPEG
CCCCCCCCCCCCHHHHHHCCCCCCEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC
ATSLGIDTGARAAMRGKLADRSAAGVAALADTLKADVARVRAFDKAGLDHQARTSLAVVE
CCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
SAYDVALAGFALPYGDVAVGGWRNTPYVVIQNVGAYLDIPKFLDSDHPVKTSADAEAYLA
HHHHHHHHHHCCCCCCEEECCCCCCCEEEEECCCCCCCCHHHHCCCCCCCCCCHHHHHHH
RLGAFPGVLDGETERMKAAAAQGLIAPAFLIDKAVGQMEASLADAKAGGSMVESLNRRAA
HHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
AAELNGDWGARAAKIVQGPVAAALERQLAEMKAQRPKATMDAGLWARPGGDEWYAWGLRA
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCEEEEEEEC
STTTRMTPDEIHEMGRQELAELHGRMDPILKKLGYTQGSVGDRMNALARDPRYKFPDNDA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCC
GRAEILAYIQTWLGKIRAELPRAFRTLVKGNVEVKRLPLAEEPGAPAAYGGAGSIDGSIP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC
GRFWINLRTTELHSKYSLPDLTMHEAIPGHAWQGEYAHSMPLIRTMLAFNAYSEGWALYA
CEEEEEEEEHHHHCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHH
EQLADELGLYDDFEVGRLGYLQSLAFRACRLVVDTGLHAKRWTREQGVRFFVEENGSNPL
HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCEEEEECCCCCHH
EVASEVDRYCSWAGQACGYKVGHSEIVRQRGLAQAALGARYDLRDFNDVVLKGGNVPLDV
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCHHHHHHCCCCCCCCCCHHEEECCCCCHHH
LALNVAEYVAGAKG
HHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA