Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is kefB [H]
Identifier: 103487449
GI number: 103487449
Start: 2071104
End: 2072888
Strand: Direct
Name: kefB [H]
Synonym: Sala_1965
Alternate gene names: 103487449
Gene position: 2071104-2072888 (Clockwise)
Preceding gene: 103487448
Following gene: 103487451
Centisome position: 61.91
GC content: 66.5
Gene sequence:
>1785_bases ATGGTATCAGAGACAGAAACCTCCGCCATCGGCAATGCGCTGGTGGTGCTGGGCGCGGCGGGCATCGTGATCCCCGCCTT TGCGCGCTTTCGCCTGCCGCCGGTCATCGGTTTCATCCTCGTCGGGCTGCTCGTCGGCCCATCGGGGCTGGGCGCGCTTG CCGCCGATTATCCGTGGCTGCGACATGTCACGATCGGATCGACCGAGGACATCGCGCTCTTTGCCGAGTTCGGTATCATC CTGCTGCTTTTCTCGATCGGGCTCGAATTGTCGTTCCGCCGCCTGTGGCAGCTCAGGAAGCTGGTGTTCGGCATCGGCGC CGCAGAGTTGTTGTTCGGCGGCGCGATCCTTGGCGGCGCGCTGATGCTCTTCACCGATCACGCGACGCCCGCTGCCTTCG GTCTCGGCATCGCGCTCGCGCTGTCCTCGACCGCGCTCGTGCTGCCGATCGCCGGCACCAAATCGGCGGTGGGCCGCGCT TCCTTTTCGATGCTGTTGTTCGAGGATCTGGCAATCGTCCCGATCATCTTCATCCTTGGCGCCTTCGCACCCACCGCCAG CGGTGACAGCACCCAATTGCTGTTCGCAACGCTGTGGCAGGGCGGGCTCGTCATTGCCGCGCTTGCGATTGGCGGCTGGT TCCTGCTGCCGCGCATCTTTGCCCAGGCCGCGCGCGCCAAGGATCCCGAACTTTTCCTCGCCGCCAGCCTGCTGGTCGTC ATCGTCGCGGCGCTTGCAACGGCCGCGGTTGGCCTGTCGCCGATCGTCGGCGCGTTGCTCGCGGGGCTGATGATCGCCGA AACCGAATATCATGGCGAAGTCGAAGCGATCACCGCGCCGTTCAAGGGGCTCGCGCTCGGCGTCTTTCTGATCAGCGTCG GCATGGGACTCAACCTCCGCACGATCGTCGAGCAATGGCCCGAACTGATGGTTGCCGTGGGCGGGGTCATCACGATCAAG GCGCTGGTCACCGCCGCGCTGCTACGCTTTTCGGGTTTTGCACGCCGCGGGACCGCGGCCGAGGTCGGGCTGTTGATGGC GAGCCCGTCGGAAACCACGCTGATCGTGCTCGCCGCCGCATTGCAGGCGCAGCTCATCACCAGCAGCACCGCCGAGTTCT GGCAACTCGTCACCGCAATCGGCCTGACGATCACTCCGCTTCTTGCGCGCGTCGGCCACGACGTTGCCCGGCAAATCGAA ATGCGCAGCGGCGATGCCGACGATGACGAGACGCCCGAGGGTCGCACCGTCATCGTCGGCTTCGGGCGCGTCGGCCGCAC CGTCGCCGAGTTGCTTCGCGAACATGACCGGCCCTATATCGCGGTCGATGCCGACATCGACACGGTGGCGGCGGCCCGGC GCGACGGCTTTATCGTCCGCTACGCCGACGTCGCGCGGCCCGGCAGCCTCGACAGGCTGGGCATCGAAAATGCCCAGGCT ATCGTCCTGACGATGGACGACCCGGTCCAGCAGCTGCGCATGACGCGGCGGCTGCGGCAGAAATATCCCGACCTGCCGAT CATCAGCCGCGCGCGCGACGCCGACCATGCCGCTGCGCTCTATCAGGCGGGCGCCAGCGACGCCGTGCCCGAAACGCTCG AAAGCTCGCTGCAACTCGCCGAGGCCGTGCTCATCGACCTGGGCGTCGCCATGGGACCGGTGATCGCGTCGATCCACGAC GTGCGCGCCAGAATGCGCCACGACATCATGACAAAGGGCAGGCTCGATCACGAACCCCGCGTCCACCGACCCCAGATCGG CGCTCGCAGCGGCGAAAGCGGTTAG
Upstream 100 bases:
>100_bases TCTCTTCTCGCGCTGGGCCAAATCGGCTCCGTCTCGGTGAATCAGATATACGGCACGCCGCTCTAGCCAATCGGGGCCGG CCTGCATAAGGTCGGCCCTT
Downstream 100 bases:
>100_bases AGCGGCGTGCTCTAACGTCCGCCAACCGCGGCATCGAGACGGGTCGACATCGCACCATTCAGTGCCGACGCATCGGCGAG CGTCATGCCCTCGGGCAGGA
Product: sodium/hydrogen exchanger
Products: Proton [Cytoplasm]; K (I) [Periplasm] [C]
Alternate protein names: K(+)/H(+) antiporter; NEM-activatable K(+)/H(+) antiporter [H]
Number of amino acids: Translated: 594; Mature: 594
Protein sequence:
>594_residues MVSETETSAIGNALVVLGAAGIVIPAFARFRLPPVIGFILVGLLVGPSGLGALAADYPWLRHVTIGSTEDIALFAEFGII LLLFSIGLELSFRRLWQLRKLVFGIGAAELLFGGAILGGALMLFTDHATPAAFGLGIALALSSTALVLPIAGTKSAVGRA SFSMLLFEDLAIVPIIFILGAFAPTASGDSTQLLFATLWQGGLVIAALAIGGWFLLPRIFAQAARAKDPELFLAASLLVV IVAALATAAVGLSPIVGALLAGLMIAETEYHGEVEAITAPFKGLALGVFLISVGMGLNLRTIVEQWPELMVAVGGVITIK ALVTAALLRFSGFARRGTAAEVGLLMASPSETTLIVLAAALQAQLITSSTAEFWQLVTAIGLTITPLLARVGHDVARQIE MRSGDADDDETPEGRTVIVGFGRVGRTVAELLREHDRPYIAVDADIDTVAAARRDGFIVRYADVARPGSLDRLGIENAQA IVLTMDDPVQQLRMTRRLRQKYPDLPIISRARDADHAAALYQAGASDAVPETLESSLQLAEAVLIDLGVAMGPVIASIHD VRARMRHDIMTKGRLDHEPRVHRPQIGARSGESG
Sequences:
>Translated_594_residues MVSETETSAIGNALVVLGAAGIVIPAFARFRLPPVIGFILVGLLVGPSGLGALAADYPWLRHVTIGSTEDIALFAEFGII LLLFSIGLELSFRRLWQLRKLVFGIGAAELLFGGAILGGALMLFTDHATPAAFGLGIALALSSTALVLPIAGTKSAVGRA SFSMLLFEDLAIVPIIFILGAFAPTASGDSTQLLFATLWQGGLVIAALAIGGWFLLPRIFAQAARAKDPELFLAASLLVV IVAALATAAVGLSPIVGALLAGLMIAETEYHGEVEAITAPFKGLALGVFLISVGMGLNLRTIVEQWPELMVAVGGVITIK ALVTAALLRFSGFARRGTAAEVGLLMASPSETTLIVLAAALQAQLITSSTAEFWQLVTAIGLTITPLLARVGHDVARQIE MRSGDADDDETPEGRTVIVGFGRVGRTVAELLREHDRPYIAVDADIDTVAAARRDGFIVRYADVARPGSLDRLGIENAQA IVLTMDDPVQQLRMTRRLRQKYPDLPIISRARDADHAAALYQAGASDAVPETLESSLQLAEAVLIDLGVAMGPVIASIHD VRARMRHDIMTKGRLDHEPRVHRPQIGARSGESG >Mature_594_residues MVSETETSAIGNALVVLGAAGIVIPAFARFRLPPVIGFILVGLLVGPSGLGALAADYPWLRHVTIGSTEDIALFAEFGII LLLFSIGLELSFRRLWQLRKLVFGIGAAELLFGGAILGGALMLFTDHATPAAFGLGIALALSSTALVLPIAGTKSAVGRA SFSMLLFEDLAIVPIIFILGAFAPTASGDSTQLLFATLWQGGLVIAALAIGGWFLLPRIFAQAARAKDPELFLAASLLVV IVAALATAAVGLSPIVGALLAGLMIAETEYHGEVEAITAPFKGLALGVFLISVGMGLNLRTIVEQWPELMVAVGGVITIK ALVTAALLRFSGFARRGTAAEVGLLMASPSETTLIVLAAALQAQLITSSTAEFWQLVTAIGLTITPLLARVGHDVARQIE MRSGDADDDETPEGRTVIVGFGRVGRTVAELLREHDRPYIAVDADIDTVAAARRDGFIVRYADVARPGSLDRLGIENAQA IVLTMDDPVQQLRMTRRLRQKYPDLPIISRARDADHAAALYQAGASDAVPETLESSLQLAEAVLIDLGVAMGPVIASIHD VRARMRHDIMTKGRLDHEPRVHRPQIGARSGESG
Specific function: Transport system that facilitates potassium-efflux, possibly by potassium-proton antiport [H]
COG id: COG0475
COG function: function code P; Kef-type K+ transport systems, membrane components
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 RCK N-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1786232, Length=578, Percent_Identity=32.8719723183391, Blast_Score=254, Evalue=2e-68, Organism=Escherichia coli, GI1789749, Length=568, Percent_Identity=34.1549295774648, Blast_Score=240, Evalue=2e-64, Organism=Escherichia coli, GI1786685, Length=525, Percent_Identity=24.5714285714286, Blast_Score=91, Evalue=2e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006153 - InterPro: IPR020884 - InterPro: IPR004771 - InterPro: IPR016040 - InterPro: IPR003148 [H]
Pfam domain/function: PF00999 Na_H_Exchanger; PF02254 TrkA_N [H]
EC number: NA
Molecular weight: Translated: 62617; Mature: 62617
Theoretical pI: Translated: 5.65; Mature: 5.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVSETETSAIGNALVVLGAAGIVIPAFARFRLPPVIGFILVGLLVGPSGLGALAADYPWL CCCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHCCCCCC RHVTIGSTEDIALFAEFGIILLLFSIGLELSFRRLWQLRKLVFGIGAAELLFGGAILGGA EEEECCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC LMLFTDHATPAAFGLGIALALSSTALVLPIAGTKSAVGRASFSMLLFEDLAIVPIIFILG CEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH AFAPTASGDSTQLLFATLWQGGLVIAALAIGGWFLLPRIFAQAARAKDPELFLAASLLVV CCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH IVAALATAAVGLSPIVGALLAGLMIAETEYHGEVEAITAPFKGLALGVFLISVGMGLNLR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCHH TIVEQWPELMVAVGGVITIKALVTAALLRFSGFARRGTAAEVGLLMASPSETTLIVLAAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHEEEEECCCCCHHHHHHHH LQAQLITSSTAEFWQLVTAIGLTITPLLARVGHDVARQIEMRSGDADDDETPEGRTVIVG HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEE FGRVGRTVAELLREHDRPYIAVDADIDTVAAARRDGFIVRYADVARPGSLDRLGIENAQA CCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCE IVLTMDDPVQQLRMTRRLRQKYPDLPIISRARDADHAAALYQAGASDAVPETLESSLQLA EEEECCCHHHHHHHHHHHHHHCCCCCCHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHH EAVLIDLGVAMGPVIASIHDVRARMRHDIMTKGRLDHEPRVHRPQIGARSGESG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MVSETETSAIGNALVVLGAAGIVIPAFARFRLPPVIGFILVGLLVGPSGLGALAADYPWL CCCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHCCCCCC RHVTIGSTEDIALFAEFGIILLLFSIGLELSFRRLWQLRKLVFGIGAAELLFGGAILGGA EEEECCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC LMLFTDHATPAAFGLGIALALSSTALVLPIAGTKSAVGRASFSMLLFEDLAIVPIIFILG CEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH AFAPTASGDSTQLLFATLWQGGLVIAALAIGGWFLLPRIFAQAARAKDPELFLAASLLVV CCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH IVAALATAAVGLSPIVGALLAGLMIAETEYHGEVEAITAPFKGLALGVFLISVGMGLNLR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCHH TIVEQWPELMVAVGGVITIKALVTAALLRFSGFARRGTAAEVGLLMASPSETTLIVLAAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHEEEEECCCCCHHHHHHHH LQAQLITSSTAEFWQLVTAIGLTITPLLARVGHDVARQIEMRSGDADDDETPEGRTVIVG HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEE FGRVGRTVAELLREHDRPYIAVDADIDTVAAARRDGFIVRYADVARPGSLDRLGIENAQA CCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCE IVLTMDDPVQQLRMTRRLRQKYPDLPIISRARDADHAAALYQAGASDAVPETLESSLQLA EEEECCCHHHHHHHHHHHHHHCCCCCCHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHH EAVLIDLGVAMGPVIASIHDVRARMRHDIMTKGRLDHEPRVHRPQIGARSGESG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Proton [Periplasm]; K (I) [Cytoplasm] [C]
Specific reaction: Proton [Periplasm] + K (I) [Cytoplasm] = Proton [Cytoplasm] + K (I) [Periplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA