Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is 103487418
Identifier: 103487418
GI number: 103487418
Start: 2039218
End: 2040012
Strand: Direct
Name: 103487418
Synonym: Sala_1934
Alternate gene names: NA
Gene position: 2039218-2040012 (Clockwise)
Preceding gene: 103487417
Following gene: 103487420
Centisome position: 60.96
GC content: 71.19
Gene sequence:
>795_bases ATGCGGCATCAGCTGAGCTTCATCTGCGAAGGCGCCAGGCTCGCCGCCACGCTCGACGAGGCGCCGGGAGCGACCGGCCT GCTGATCGTGTCGGGCGGAAACGAAATCCGCTGCGGCGCGCATCGCGGCATGGCGATGCTTGCGGCGCGCGTTGCGACCG CCGGTCATCCGGTGTTCCGCTTCGACCGCCGCGGGATCGGCGACAGCGAAGGCACGAATTGCGGTTTCGAAAGCAGCGCA CCCGACATTGCCGCCGCCACCGCCGCCTTTCGCGCCGCCGCGCCGCATGTCCAGCGCGTCGTCGCCTTTGGCAATTGCGA CGCGGCGAGCGCGCTCCTGCTCCACCAGCCGCTACCCCTCGACGCCCTGATCCTTGCCAATCCCTGGACCTATGAGGCGG AGGCAATGGGGGCGGGCGACGCGCTGCCTCCCCCCGCCGCCATCCGCGCACGCTACCTCGCGCGGCTCGCCGATCCCCAA AGCCTGCTGCGCCTGCTGCGCGGCGATATTGATTTCGCCAAGCTGCGTCGCGGTCTCGCCGCGCTCCGTGGACCCAAACC CGCGTCGGCGCCCGACGGCCTCGCCGCGCGCTTGAACGAAGCGGCCCGGCGCCTCGCGATCCCCGCGACGATCCTGCTCG CGACCGGCGACCGCACCGCGCAGGCCTTTGCCGCCGACTGTCCCGACGCGCTAAAGCGCCTCCCCGTCGAACGCCTTGCG AGCCCGTCGCACAGCTTCGCGGGCGCGGACGGTGATTGGCTCACGGCGCGGATATTGGAGGTTTTGGGGCGTTGA
Upstream 100 bases:
>100_bases GCGGGATCGCGGGCACCCCCCTCTGGCTGCGCGCCGAGCCGGGCGAGGACGCAGCGATGGCGCGCGCGATCGCCGCGGAC ATCGCCGCATGGAGCCGGAC
Downstream 100 bases:
>100_bases TGTTGCCGCGCCTGCGCGTGATGGCGGTTTTGGGGTTGTGATCCGCCGATCCTCCCCCTCCCCGTTCCGGGGAGGATCGT ATGACCGCTTCCGGCCGTTC
Product: alpha/beta hydrolase fold
Products: NA
Alternate protein names: Alpha/Beta Hydrolase Fold
Number of amino acids: Translated: 264; Mature: 264
Protein sequence:
>264_residues MRHQLSFICEGARLAATLDEAPGATGLLIVSGGNEIRCGAHRGMAMLAARVATAGHPVFRFDRRGIGDSEGTNCGFESSA PDIAAATAAFRAAAPHVQRVVAFGNCDAASALLLHQPLPLDALILANPWTYEAEAMGAGDALPPPAAIRARYLARLADPQ SLLRLLRGDIDFAKLRRGLAALRGPKPASAPDGLAARLNEAARRLAIPATILLATGDRTAQAFAADCPDALKRLPVERLA SPSHSFAGADGDWLTARILEVLGR
Sequences:
>Translated_264_residues MRHQLSFICEGARLAATLDEAPGATGLLIVSGGNEIRCGAHRGMAMLAARVATAGHPVFRFDRRGIGDSEGTNCGFESSA PDIAAATAAFRAAAPHVQRVVAFGNCDAASALLLHQPLPLDALILANPWTYEAEAMGAGDALPPPAAIRARYLARLADPQ SLLRLLRGDIDFAKLRRGLAALRGPKPASAPDGLAARLNEAARRLAIPATILLATGDRTAQAFAADCPDALKRLPVERLA SPSHSFAGADGDWLTARILEVLGR >Mature_264_residues MRHQLSFICEGARLAATLDEAPGATGLLIVSGGNEIRCGAHRGMAMLAARVATAGHPVFRFDRRGIGDSEGTNCGFESSA PDIAAATAAFRAAAPHVQRVVAFGNCDAASALLLHQPLPLDALILANPWTYEAEAMGAGDALPPPAAIRARYLARLADPQ SLLRLLRGDIDFAKLRRGLAALRGPKPASAPDGLAARLNEAARRLAIPATILLATGDRTAQAFAADCPDALKRLPVERLA SPSHSFAGADGDWLTARILEVLGR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27589; Mature: 27589
Theoretical pI: Translated: 8.51; Mature: 8.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRHQLSFICEGARLAATLDEAPGATGLLIVSGGNEIRCGAHRGMAMLAARVATAGHPVFR CCCCHHHHCCCCHHEEEHHCCCCCCEEEEEECCCEEEECHHHHHHHHHHHHHHCCCCEEE FDRRGIGDSEGTNCGFESSAPDIAAATAAFRAAAPHVQRVVAFGNCDAASALLLHQPLPL ECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCC DALILANPWTYEAEAMGAGDALPPPAAIRARYLARLADPQSLLRLLRGDIDFAKLRRGLA CEEEEECCCCCCHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHH ALRGPKPASAPDGLAARLNEAARRLAIPATILLATGDRTAQAFAADCPDALKRLPVERLA HHCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHCCHHHHHHCCHHHHC SPSHSFAGADGDWLTARILEVLGR CCCCCCCCCCCCHHHHHHHHHHCC >Mature Secondary Structure MRHQLSFICEGARLAATLDEAPGATGLLIVSGGNEIRCGAHRGMAMLAARVATAGHPVFR CCCCHHHHCCCCHHEEEHHCCCCCCEEEEEECCCEEEECHHHHHHHHHHHHHHCCCCEEE FDRRGIGDSEGTNCGFESSAPDIAAATAAFRAAAPHVQRVVAFGNCDAASALLLHQPLPL ECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCC DALILANPWTYEAEAMGAGDALPPPAAIRARYLARLADPQSLLRLLRGDIDFAKLRRGLA CEEEEECCCCCCHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHH ALRGPKPASAPDGLAARLNEAARRLAIPATILLATGDRTAQAFAADCPDALKRLPVERLA HHCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHCCHHHHHHCCHHHHC SPSHSFAGADGDWLTARILEVLGR CCCCCCCCCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA