| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487275
Identifier: 103487275
GI number: 103487275
Start: 1888530
End: 1889312
Strand: Direct
Name: 103487275
Synonym: Sala_1791
Alternate gene names: NA
Gene position: 1888530-1889312 (Clockwise)
Preceding gene: 103487272
Following gene: 103487277
Centisome position: 56.46
GC content: 71.39
Gene sequence:
>783_bases TTGCCGCCAGATGCCAATTTCCTGGCGCCGATCATCGCAGAAACGCTGCTCGACCGGCTGGCGATGGTAACGCGCGATTT TGCGCGCACGCTGCTCATCGGCGCGCACGACGCGGCCCTCACCGACCATCTGCGCGCGACCGGCACCGAGCTTTGCATCG TCGAGGCTGCGCCGCGCCTCGCCGCGCGCACAGGCGCGATCGCGATCGAAGCTGATGCGATCGACCTGCCGTTCGAGAGC TTCGACCTCATCGTCTGGCCCGGCGGGCTCGACAGCATCAATGATGTGCCCGGCGCGCTGCTGCGCCTTCGCGCGCTGCT TGCGCCCGACGGGCTGCTGCTCGGCGCCTTTGTCGGCGACGGCAGCCTGCCCCGGCTGCGCCGCGCGATGATGGCGGACG GTGTCCGCCCGGTCGCGCGGATGCACCCGCAGATCGACCTTGCGGCGATGGGCAATCTGCTCCAGCGCGTCGGCTTTGCG TTGCCGGTCGTCGACGTCGAGGCTCTGACGGTGCGCTATAATGACTGGTTTGCGCTGGTGCGCGACCTGCGCGCCGCGGG CCTGTCGAACCGCCTCGATCCCGCGCCGCCGCCACTGACGCGCGACGAAGCGGGGCGCATCGCCGCCGCCTTCGCCGCCG CCGCCGACCCCGACGGCCGCATCGCCGAGGCGTTTCGACTCGTTTATTTCAGCGGCTGGGCGCCGCACCCCAACCAGCCG CAGCCCGCGCGGCGCGGCAGCGGCACGGCCTCGCTGGCAGCGGCGCTGAAGCCGAAACCCTAG
Upstream 100 bases:
>100_bases GAAGCATCGCCGGGGACGGCACAAGCGGCGCATGTCGCAGTCACCCCGTCCGCTCTTTTCCCCTGCCCGCGACCGGGCGC AGCGCGATCGGCTGGCACGC
Downstream 100 bases:
>100_bases CTAGATCAACGCTTCCAGCAATCCGATCAACGGCTTGTCGGCGGGCGGCATCGGAAGCGCGTGAAGCTCGACCGGACGCA CCCAGTCTAGCGCGCTTGCA
Product: methyltransferase type 12
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 260; Mature: 259
Protein sequence:
>260_residues MPPDANFLAPIIAETLLDRLAMVTRDFARTLLIGAHDAALTDHLRATGTELCIVEAAPRLAARTGAIAIEADAIDLPFES FDLIVWPGGLDSINDVPGALLRLRALLAPDGLLLGAFVGDGSLPRLRRAMMADGVRPVARMHPQIDLAAMGNLLQRVGFA LPVVDVEALTVRYNDWFALVRDLRAAGLSNRLDPAPPPLTRDEAGRIAAAFAAAADPDGRIAEAFRLVYFSGWAPHPNQP QPARRGSGTASLAAALKPKP
Sequences:
>Translated_260_residues MPPDANFLAPIIAETLLDRLAMVTRDFARTLLIGAHDAALTDHLRATGTELCIVEAAPRLAARTGAIAIEADAIDLPFES FDLIVWPGGLDSINDVPGALLRLRALLAPDGLLLGAFVGDGSLPRLRRAMMADGVRPVARMHPQIDLAAMGNLLQRVGFA LPVVDVEALTVRYNDWFALVRDLRAAGLSNRLDPAPPPLTRDEAGRIAAAFAAAADPDGRIAEAFRLVYFSGWAPHPNQP QPARRGSGTASLAAALKPKP >Mature_259_residues PPDANFLAPIIAETLLDRLAMVTRDFARTLLIGAHDAALTDHLRATGTELCIVEAAPRLAARTGAIAIEADAIDLPFESF DLIVWPGGLDSINDVPGALLRLRALLAPDGLLLGAFVGDGSLPRLRRAMMADGVRPVARMHPQIDLAAMGNLLQRVGFAL PVVDVEALTVRYNDWFALVRDLRAAGLSNRLDPAPPPLTRDEAGRIAAAFAAAADPDGRIAEAFRLVYFSGWAPHPNQPQ PARRGSGTASLAAALKPKP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI40018642, Length=265, Percent_Identity=28.6792452830189, Blast_Score=104, Evalue=7e-23, Organism=Homo sapiens, GI86792933, Length=259, Percent_Identity=25.4826254826255, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17535003, Length=178, Percent_Identity=28.0898876404494, Blast_Score=86, Evalue=1e-17, Organism=Drosophila melanogaster, GI19922210, Length=265, Percent_Identity=29.811320754717, Blast_Score=114, Evalue=5e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013216 [H]
Pfam domain/function: PF08241 Methyltransf_11 [H]
EC number: NA
Molecular weight: Translated: 27635; Mature: 27504
Theoretical pI: Translated: 6.13; Mature: 6.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPPDANFLAPIIAETLLDRLAMVTRDFARTLLIGAHDAALTDHLRATGTELCIVEAAPRL CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEEECCCHH AARTGAIAIEADAIDLPFESFDLIVWPGGLDSINDVPGALLRLRALLAPDGLLLGAFVGD HHHCCCEEEECCCEECCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECC GSLPRLRRAMMADGVRPVARMHPQIDLAAMGNLLQRVGFALPVVDVEALTVRYNDWFALV CCHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEEEEEEEEHHHHHHH RDLRAAGLSNRLDPAPPPLTRDEAGRIAAAFAAAADPDGRIAEAFRLVYFSGWAPHPNQP HHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHEECCCCCCCCC QPARRGSGTASLAAALKPKP CCCCCCCCCHHHHHCCCCCC >Mature Secondary Structure PPDANFLAPIIAETLLDRLAMVTRDFARTLLIGAHDAALTDHLRATGTELCIVEAAPRL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEEECCCHH AARTGAIAIEADAIDLPFESFDLIVWPGGLDSINDVPGALLRLRALLAPDGLLLGAFVGD HHHCCCEEEECCCEECCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECC GSLPRLRRAMMADGVRPVARMHPQIDLAAMGNLLQRVGFALPVVDVEALTVRYNDWFALV CCHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEEEEEEEEHHHHHHH RDLRAAGLSNRLDPAPPPLTRDEAGRIAAAFAAAADPDGRIAEAFRLVYFSGWAPHPNQP HHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHEECCCCCCCCC QPARRGSGTASLAAALKPKP CCCCCCCCCHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9823893 [H]