Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

Click here to switch to the map view.

The map label for this gene is 103487253

Identifier: 103487253

GI number: 103487253

Start: 1864453

End: 1864908

Strand: Direct

Name: 103487253

Synonym: Sala_1768

Alternate gene names: NA

Gene position: 1864453-1864908 (Clockwise)

Preceding gene: 103487252

Following gene: 103487255

Centisome position: 55.74

GC content: 67.76

Gene sequence:

>456_bases
ATGCGCACCCACCAGCTGATCATCGCCCTGTTCCAGCGTTTCTGCTGGCTCGACGAAGGGTTGCAGGCACGGCTTCACGC
CCGCGGCTGGCCCGACGTCAACCGGCCACAATCGATGGTGATGACCAATATCGTCAGCGGCATCGTGCGCCCGTCGGACA
TCGCCCGCAACCTCGGCGTACCGCGGCAGGCGATCCACAGCACCATCAACCAGATGGTGAGGCTCGGGATCGTCCGGCTC
GACGTCGACCCCGACGACCGGCGGCACATGATCGTCTCGTTCACCGAAACCGGCGCCCGGATGTGCAAGGACGCGCAGCG
CGCGATGGATGCGCTCGCCGCACAGATCACGGCGCGGATCGGGCAGGACCGGTTCGACGCGCTGTTCGACGCGCTCGAAG
CCGACTGGGGCGACAATATGGCGGGCGCGCCCGCTCCCCGGCGCGCAGCATGCTGA

Upstream 100 bases:

>100_bases
ATGTCTTTATCGTCAAACCCAACCATCACATGCTGGGACCAAACAACTAGCGTGCGCGCGCCGACACGCCGTCGACCGCG
AGAGCCTTCCTTTCCATCCT

Downstream 100 bases:

>100_bases
TGGGACGTGAGCAGCGGAAGCGCGGAAAGCCACCAGAGCTGAAGTCGATACAGCCTAGACCGCGGCCCTCGCCAACCGGT
CGTTGATCGCCGCGCCCAGC

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 151; Mature: 151

Protein sequence:

>151_residues
MRTHQLIIALFQRFCWLDEGLQARLHARGWPDVNRPQSMVMTNIVSGIVRPSDIARNLGVPRQAIHSTINQMVRLGIVRL
DVDPDDRRHMIVSFTETGARMCKDAQRAMDALAAQITARIGQDRFDALFDALEADWGDNMAGAPAPRRAAC

Sequences:

>Translated_151_residues
MRTHQLIIALFQRFCWLDEGLQARLHARGWPDVNRPQSMVMTNIVSGIVRPSDIARNLGVPRQAIHSTINQMVRLGIVRL
DVDPDDRRHMIVSFTETGARMCKDAQRAMDALAAQITARIGQDRFDALFDALEADWGDNMAGAPAPRRAAC
>Mature_151_residues
MRTHQLIIALFQRFCWLDEGLQARLHARGWPDVNRPQSMVMTNIVSGIVRPSDIARNLGVPRQAIHSTINQMVRLGIVRL
DVDPDDRRHMIVSFTETGARMCKDAQRAMDALAAQITARIGQDRFDALFDALEADWGDNMAGAPAPRRAAC

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16921; Mature: 16921

Theoretical pI: Translated: 8.54; Mature: 8.54

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
7.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
7.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTHQLIIALFQRFCWLDEGLQARLHARGWPDVNRPQSMVMTNIVSGIVRPSDIARNLGV
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC
PRQAIHSTINQMVRLGIVRLDVDPDDRRHMIVSFTETGARMCKDAQRAMDALAAQITARI
CHHHHHHHHHHHHHHHHHEECCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
GQDRFDALFDALEADWGDNMAGAPAPRRAAC
CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRTHQLIIALFQRFCWLDEGLQARLHARGWPDVNRPQSMVMTNIVSGIVRPSDIARNLGV
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC
PRQAIHSTINQMVRLGIVRLDVDPDDRRHMIVSFTETGARMCKDAQRAMDALAAQITARI
CHHHHHHHHHHHHHHHHHEECCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
GQDRFDALFDALEADWGDNMAGAPAPRRAAC
CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA