| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487253
Identifier: 103487253
GI number: 103487253
Start: 1864453
End: 1864908
Strand: Direct
Name: 103487253
Synonym: Sala_1768
Alternate gene names: NA
Gene position: 1864453-1864908 (Clockwise)
Preceding gene: 103487252
Following gene: 103487255
Centisome position: 55.74
GC content: 67.76
Gene sequence:
>456_bases ATGCGCACCCACCAGCTGATCATCGCCCTGTTCCAGCGTTTCTGCTGGCTCGACGAAGGGTTGCAGGCACGGCTTCACGC CCGCGGCTGGCCCGACGTCAACCGGCCACAATCGATGGTGATGACCAATATCGTCAGCGGCATCGTGCGCCCGTCGGACA TCGCCCGCAACCTCGGCGTACCGCGGCAGGCGATCCACAGCACCATCAACCAGATGGTGAGGCTCGGGATCGTCCGGCTC GACGTCGACCCCGACGACCGGCGGCACATGATCGTCTCGTTCACCGAAACCGGCGCCCGGATGTGCAAGGACGCGCAGCG CGCGATGGATGCGCTCGCCGCACAGATCACGGCGCGGATCGGGCAGGACCGGTTCGACGCGCTGTTCGACGCGCTCGAAG CCGACTGGGGCGACAATATGGCGGGCGCGCCCGCTCCCCGGCGCGCAGCATGCTGA
Upstream 100 bases:
>100_bases ATGTCTTTATCGTCAAACCCAACCATCACATGCTGGGACCAAACAACTAGCGTGCGCGCGCCGACACGCCGTCGACCGCG AGAGCCTTCCTTTCCATCCT
Downstream 100 bases:
>100_bases TGGGACGTGAGCAGCGGAAGCGCGGAAAGCCACCAGAGCTGAAGTCGATACAGCCTAGACCGCGGCCCTCGCCAACCGGT CGTTGATCGCCGCGCCCAGC
Product: MarR family transcriptional regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 151; Mature: 151
Protein sequence:
>151_residues MRTHQLIIALFQRFCWLDEGLQARLHARGWPDVNRPQSMVMTNIVSGIVRPSDIARNLGVPRQAIHSTINQMVRLGIVRL DVDPDDRRHMIVSFTETGARMCKDAQRAMDALAAQITARIGQDRFDALFDALEADWGDNMAGAPAPRRAAC
Sequences:
>Translated_151_residues MRTHQLIIALFQRFCWLDEGLQARLHARGWPDVNRPQSMVMTNIVSGIVRPSDIARNLGVPRQAIHSTINQMVRLGIVRL DVDPDDRRHMIVSFTETGARMCKDAQRAMDALAAQITARIGQDRFDALFDALEADWGDNMAGAPAPRRAAC >Mature_151_residues MRTHQLIIALFQRFCWLDEGLQARLHARGWPDVNRPQSMVMTNIVSGIVRPSDIARNLGVPRQAIHSTINQMVRLGIVRL DVDPDDRRHMIVSFTETGARMCKDAQRAMDALAAQITARIGQDRFDALFDALEADWGDNMAGAPAPRRAAC
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16921; Mature: 16921
Theoretical pI: Translated: 8.54; Mature: 8.54
Prosite motif: PS50995 HTH_MARR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 5.3 %Met (Translated Protein) 7.3 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 5.3 %Met (Mature Protein) 7.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTHQLIIALFQRFCWLDEGLQARLHARGWPDVNRPQSMVMTNIVSGIVRPSDIARNLGV CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC PRQAIHSTINQMVRLGIVRLDVDPDDRRHMIVSFTETGARMCKDAQRAMDALAAQITARI CHHHHHHHHHHHHHHHHHEECCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH GQDRFDALFDALEADWGDNMAGAPAPRRAAC CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC >Mature Secondary Structure MRTHQLIIALFQRFCWLDEGLQARLHARGWPDVNRPQSMVMTNIVSGIVRPSDIARNLGV CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCC PRQAIHSTINQMVRLGIVRLDVDPDDRRHMIVSFTETGARMCKDAQRAMDALAAQITARI CHHHHHHHHHHHHHHHHHEECCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH GQDRFDALFDALEADWGDNMAGAPAPRRAAC CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA