Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103487127

Identifier: 103487127

GI number: 103487127

Start: 1724741

End: 1725919

Strand: Direct

Name: 103487127

Synonym: Sala_1642

Alternate gene names: NA

Gene position: 1724741-1725919 (Clockwise)

Preceding gene: 103487125

Following gene: 103487128

Centisome position: 51.56

GC content: 60.31

Gene sequence:

>1179_bases
ATGTTTTTCGGCTTCCTCGACGAGCTTCGCGCCGCGGGCATTCCCGCCAGCCTGAAAGAGCATCTGATGCTGCTGGAGGC
GCTCGACCGCGAGGTCATCGACCGTACCCCCGAACAATTCTATTACCTCTCCCGCGCCATCTATGTGAAGGACGAGGGCC
TGCTCGACCGCTTCGACCAGGTGTTCAACAAGGTTTTCAAGGGGCTGCTCACCGATTACGGCCAGAACCCCGTCGACGTG
CCCGAAGAATGGCTGAAAGCCGTCGCCGAGAAATATCTGACCCCCGAAGAGATGGAAGCGATCAAGTCGCTAGGCGACTG
GGACGAGATCATGGAGACGCTCAAAAAGCGGCTCGAGGAACAGCAGAAGCGCCATCAGGGCGGCAACAAATGGATCGGCA
CCGGCGGCACCAGCCCCTTTGGCAATTCGGGCTACAACCCCGAAGGCGTGCGGATCGGCGGCGAGAGCAGGCACAAGCGC
GCGCTGAAAGTCTGGGAAAAGCGCGAGTTCCAGAACCTCGACAACACCAAGGAACTCGGCACCCGCAACATCAAGATCGC
GCTGCGCCGCCTGCGCAAATTCGCGCGCGAAGGCGCCGCCGACGAGCTCGACATTCCCGGCACGATCGACGGCACCGCGC
GGCAAGGCTGGCTCGACATCAGGATGCGCCCCGAACGGCGCAATGCGGTCAAGCTGTTGCTCTTTCTCGACGTCGGCGGC
TCGATGGACCCGTTCATCAAGCTGTGCGAGGAATTGTTCAGCGCCGCGACGAGCGAGTTCAAGAATCTGGAGTTCTTCTA
CTTCCACAACTGCCCGTACGAAGGCGTGTGGAAGGACAATAAGCGCCGCTGGTCCGAACGGCATCAGATGTGGGACATCC
TGCACAAATATGGCCATGATTACAAAGTTATCTTCGTCGGCGATGCGTCGATGAGCGCCTATGAGATCACCCATCCCGGC
GGCAGCGTCGAACATTTCAACGAGGAATCGGGCGCGGTCTGGCTCCAGCGGATCACCCATGTCTATCCCGCTGCCGTGTG
GCTCAATCCGGTGCCCGAGGCGCATTGGGGCTACACCCAGTCCGTCAAGCTCATCAAACAGCTGATGAACGACCGCATGT
ATCCGCTGACCCTCGCCGGCCTTGACGATGCGATGCGCGAGCTGACGCGAAAGCATTGA

Upstream 100 bases:

>100_bases
ATACTTCCCCGGATTGCCGCCATTCGCCATCGTTCGGACGCTCTCTTTCCGTAAACGTAAAGTGATTGCGCCCGCGTCCC
TGACAGGATAGTCCTGCCCC

Downstream 100 bases:

>100_bases
GCGAGGCGGCCTGATTAGGCCGTGACGATTTCAAGCTGATCCCCTAATCCCGTTCGTGTCGAGCGAAGTCGAGACACCCT
GAAGGCGTGCGCTGCCGATG

Product: hypothetical protein

Products: NA

Alternate protein names: Cytoplasmic Protein; Von Willebrand Factor Type A(VWA) Domain Protein; VWA Containing CoxE-Like Family Protein; VWA Domain Containing CoxE-Like Protein

Number of amino acids: Translated: 392; Mature: 392

Protein sequence:

>392_residues
MFFGFLDELRAAGIPASLKEHLMLLEALDREVIDRTPEQFYYLSRAIYVKDEGLLDRFDQVFNKVFKGLLTDYGQNPVDV
PEEWLKAVAEKYLTPEEMEAIKSLGDWDEIMETLKKRLEEQQKRHQGGNKWIGTGGTSPFGNSGYNPEGVRIGGESRHKR
ALKVWEKREFQNLDNTKELGTRNIKIALRRLRKFAREGAADELDIPGTIDGTARQGWLDIRMRPERRNAVKLLLFLDVGG
SMDPFIKLCEELFSAATSEFKNLEFFYFHNCPYEGVWKDNKRRWSERHQMWDILHKYGHDYKVIFVGDASMSAYEITHPG
GSVEHFNEESGAVWLQRITHVYPAAVWLNPVPEAHWGYTQSVKLIKQLMNDRMYPLTLAGLDDAMRELTRKH

Sequences:

>Translated_392_residues
MFFGFLDELRAAGIPASLKEHLMLLEALDREVIDRTPEQFYYLSRAIYVKDEGLLDRFDQVFNKVFKGLLTDYGQNPVDV
PEEWLKAVAEKYLTPEEMEAIKSLGDWDEIMETLKKRLEEQQKRHQGGNKWIGTGGTSPFGNSGYNPEGVRIGGESRHKR
ALKVWEKREFQNLDNTKELGTRNIKIALRRLRKFAREGAADELDIPGTIDGTARQGWLDIRMRPERRNAVKLLLFLDVGG
SMDPFIKLCEELFSAATSEFKNLEFFYFHNCPYEGVWKDNKRRWSERHQMWDILHKYGHDYKVIFVGDASMSAYEITHPG
GSVEHFNEESGAVWLQRITHVYPAAVWLNPVPEAHWGYTQSVKLIKQLMNDRMYPLTLAGLDDAMRELTRKH
>Mature_392_residues
MFFGFLDELRAAGIPASLKEHLMLLEALDREVIDRTPEQFYYLSRAIYVKDEGLLDRFDQVFNKVFKGLLTDYGQNPVDV
PEEWLKAVAEKYLTPEEMEAIKSLGDWDEIMETLKKRLEEQQKRHQGGNKWIGTGGTSPFGNSGYNPEGVRIGGESRHKR
ALKVWEKREFQNLDNTKELGTRNIKIALRRLRKFAREGAADELDIPGTIDGTARQGWLDIRMRPERRNAVKLLLFLDVGG
SMDPFIKLCEELFSAATSEFKNLEFFYFHNCPYEGVWKDNKRRWSERHQMWDILHKYGHDYKVIFVGDASMSAYEITHPG
GSVEHFNEESGAVWLQRITHVYPAAVWLNPVPEAHWGYTQSVKLIKQLMNDRMYPLTLAGLDDAMRELTRKH

Specific function: Unknown

COG id: COG3825

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45505; Mature: 45505

Theoretical pI: Translated: 6.66; Mature: 6.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFFGFLDELRAAGIPASLKEHLMLLEALDREVIDRTPEQFYYLSRAIYVKDEGLLDRFDQ
CCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHEEEEECCHHHHHHHH
VFNKVFKGLLTDYGQNPVDVPEEWLKAVAEKYLTPEEMEAIKSLGDWDEIMETLKKRLEE
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHH
QQKRHQGGNKWIGTGGTSPFGNSGYNPEGVRIGGESRHKRALKVWEKREFQNLDNTKELG
HHHHHCCCCEEEECCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCHHHHC
TRNIKIALRRLRKFAREGAADELDIPGTIDGTARQGWLDIRMRPERRNAVKLLLFLDVGG
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEECCC
SMDPFIKLCEELFSAATSEFKNLEFFYFHNCPYEGVWKDNKRRWSERHQMWDILHKYGHD
CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
YKVIFVGDASMSAYEITHPGGSVEHFNEESGAVWLQRITHVYPAAVWLNPVPEAHWGYTQ
EEEEEEECCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHEECCCCCCCCCHHH
SVKLIKQLMNDRMYPLTLAGLDDAMRELTRKH
HHHHHHHHHCCCCCEEEECCHHHHHHHHHHCC
>Mature Secondary Structure
MFFGFLDELRAAGIPASLKEHLMLLEALDREVIDRTPEQFYYLSRAIYVKDEGLLDRFDQ
CCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHEEEEECCHHHHHHHH
VFNKVFKGLLTDYGQNPVDVPEEWLKAVAEKYLTPEEMEAIKSLGDWDEIMETLKKRLEE
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHH
QQKRHQGGNKWIGTGGTSPFGNSGYNPEGVRIGGESRHKRALKVWEKREFQNLDNTKELG
HHHHHCCCCEEEECCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCHHHHC
TRNIKIALRRLRKFAREGAADELDIPGTIDGTARQGWLDIRMRPERRNAVKLLLFLDVGG
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEECCC
SMDPFIKLCEELFSAATSEFKNLEFFYFHNCPYEGVWKDNKRRWSERHQMWDILHKYGHD
CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
YKVIFVGDASMSAYEITHPGGSVEHFNEESGAVWLQRITHVYPAAVWLNPVPEAHWGYTQ
EEEEEEECCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHEECCCCCCCCCHHH
SVKLIKQLMNDRMYPLTLAGLDDAMRELTRKH
HHHHHHHHHCCCCCEEEECCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA