Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is 103486010
Identifier: 103486010
GI number: 103486010
Start: 535398
End: 535676
Strand: Direct
Name: 103486010
Synonym: Sala_0517
Alternate gene names: NA
Gene position: 535398-535676 (Clockwise)
Preceding gene: 103486009
Following gene: 103486016
Centisome position: 16.01
GC content: 63.44
Gene sequence:
>279_bases ATGAAAGCGCGAATCTACCAGAAGCCCAAAAATGCGATGCAGTCGGGGCGTGCGGGAACCGGGCGCTGGATGCTGGAGTT CGCCCCCGCCGAGGCGCGCAAGCCCGACCCACTGATGGGTTGGGCGGGCAGCGGCGATACGCAGCGCCAGCTTCGCCTGA GCTTTGCGAGCCGCGAGGAAGCGGTCGCCTATGCGGAAAAATATGGCATCGATGCGGAGGTCATGCCGACGCCCGTGCGC AAGCTGAAGATCCAAGCCTACGCCGACAATTTCCGGTAA
Upstream 100 bases:
>100_bases CCAAGGCGGCGCAGGCGCGGCGCGAGGGTCAATAGCCCCTTTTCGCCCGCGCTCCCTGGCGCTAAGGCGGCGGCAGAAAC ATCCGGTCAGGGACTCTCCG
Downstream 100 bases:
>100_bases CGATCGCTCGATCGGATTGGATCGAGCCACCCTTCCTTATGTTGTCATCCCGGCGAAGGCCGGGATCTCGCCGTTGCGGC AGGATGCGAGGGCGAGATTC
Product: ETC complex I subunit region
Products: NA
Alternate protein names: ETC Complex I Subunit Conserved Region; NADH-Ubiquinone Oxidoreductase; Oxidoreductase; NADH-Ubiquinone Oxidoreductase-Related Protein; NADH-Ubiquinone Oxidoreductase Subunit; NADH Dehydrogenase; ETC Complex I Subunit Conserved Region Superfamily; Oxidoreductase Protein; NDUFA4 Family NADH Ubiquinone Oxidoreductase Subunit; ETC Complex I Subunit Region Protein; NADH Dehydrogenase Fe-S; ETC Complex I Subunit Protein; NADH Dehydrogenase Subunit; NADH-Ubiquinone Oxidoreductase Family Protein; NADH Dehydrogenase Iron-Sulfur ; ETC Complex Subunit I Conserved Region Protein; Etc Complex I Subunit Conserved Region; NADH-Quinone Oxidoreductase; NADH-Ubiquinone Oxidoreductase Protein
Number of amino acids: Translated: 92; Mature: 92
Protein sequence:
>92_residues MKARIYQKPKNAMQSGRAGTGRWMLEFAPAEARKPDPLMGWAGSGDTQRQLRLSFASREEAVAYAEKYGIDAEVMPTPVR KLKIQAYADNFR
Sequences:
>Translated_92_residues MKARIYQKPKNAMQSGRAGTGRWMLEFAPAEARKPDPLMGWAGSGDTQRQLRLSFASREEAVAYAEKYGIDAEVMPTPVR KLKIQAYADNFR >Mature_92_residues MKARIYQKPKNAMQSGRAGTGRWMLEFAPAEARKPDPLMGWAGSGDTQRQLRLSFASREEAVAYAEKYGIDAEVMPTPVR KLKIQAYADNFR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI4505369, Length=90, Percent_Identity=40, Blast_Score=70, Evalue=4e-13, Organism=Drosophila melanogaster, GI18860539, Length=94, Percent_Identity=39.3617021276596, Blast_Score=68, Evalue=9e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 10379; Mature: 10379
Theoretical pI: Translated: 10.45; Mature: 10.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 5.4 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 5.4 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKARIYQKPKNAMQSGRAGTGRWMLEFAPAEARKPDPLMGWAGSGDTQRQLRLSFASREE CCCCCCCCCHHHHHCCCCCCCCEEEEECCCCCCCCCCCEECCCCCCCCHHHHHHHHCCHH AVAYAEKYGIDAEVMPTPVRKLKIQAYADNFR HHHHHHHHCCCCCCCCCCCHHEEEEEECCCCC >Mature Secondary Structure MKARIYQKPKNAMQSGRAGTGRWMLEFAPAEARKPDPLMGWAGSGDTQRQLRLSFASREE CCCCCCCCCHHHHHCCCCCCCCEEEEECCCCCCCCCCCEECCCCCCCCHHHHHHHHCCHH AVAYAEKYGIDAEVMPTPVRKLKIQAYADNFR HHHHHHHHCCCCCCCCCCCHHEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA