Definition | Sphingopyxis alaskensis RB2256, complete genome. |
---|---|
Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is pagO [H]
Identifier: 103485990
GI number: 103485990
Start: 514856
End: 515815
Strand: Direct
Name: pagO [H]
Synonym: Sala_0497
Alternate gene names: 103485990
Gene position: 514856-515815 (Clockwise)
Preceding gene: 103485989
Following gene: 103485991
Centisome position: 15.39
GC content: 67.4
Gene sequence:
>960_bases ATGAGCGCCGCGCCGACGACGCTGCTCAGCCCGCGCGTCCTGTTGCCCTTTCTTCTGGTGACGCTGATCTGGGGGTCGAC GTGGATCGTCATCAAGGGACAGCTCGGCGTCGTGCCGCCCAGCTGGTCGGTGACCTATCGCTTCGCCATCGCCGCCGCGG CGATGTTCGCCTTTGCGCTCATCCGCGGCGAGCGGCTGCGGCTCGACAAGCGCGCGATGCTCTTCGCCGCGGCACTTGGG GTCGCGCAATTCGCCCTGAACTTCAACTTCGTCTACCGGGCGGAGCAGCATATCACGTCGGGCCTTGTCGCGGTGCTGTT CGCGCTGCTGATCGTTCCCAATACGTTGATGGGACGCGCTTTCCTCAAGACACCGCTGGAGGGGCGCTTTCTGCTCGGCG CGGGGATCGCGATCGTCGGCGTGGGCCTGATGATCCTGCACGAATATCGCGCCGCGGCGCTGGGCGCGGGCGAGGTGCTG CTCGGCACCGCGCTGACGCTCGCTGGCGTGATGAGCGCCTCGATCGCCAATGTCATGCAGGGCACCGCGATCGCGCGCGC GCAATCAATGGTCGTGATGATCGGCTGGGCGATGCTGTTCGGCGCGCTCGCCGACGGCGCCTGGGCGTGGATCACCACCG GCCCGCCGGTGGTCGAGCCGACGGCGGTGTATCTGGGCGGCGTTCTCTATCTGGGCGTCGTCGCCAGCGCCGTGACCTTC CCCCTCTACTTCAACGTCATCCGTGCGGTCGGGCCGGGGCAGGCGGCGTGGTCGAGCGTGCTCATCCCGATCATCGCGAT GGGCTTTTCGACGGCGTTCGAGGATTATCGCTGGGCGATGCTGTCGGTCGCGGGCGGTATCGTCGCGCTGATCGGGCTGG TGATCGCGGTCGCCAGGCGTCCCGAGCGTCCGTCGGTCAGCGGCAATATGGTGTCTTTGCCGGTCGATTCCGACGGTTGA
Upstream 100 bases:
>100_bases TCGATTTTTACGACTGGGGTGAGGGTGCGGCGCGGCTCGTCGTCAGCTGGGATCAGGATGCCGAAGCGGTGGCGCCGCTC GCCGCCGCGATCGGTGCGCT
Downstream 100 bases:
>100_bases TCGAAAGCCGTTGCGACGGCGCCGGGGCGGACGCTAAGGCGCTGCCATGATACGCAAACTTCTCGTTTTCGCCGTCGCGG CGACTCTTGCTCAGCCAGCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 319; Mature: 318
Protein sequence:
>319_residues MSAAPTTLLSPRVLLPFLLVTLIWGSTWIVIKGQLGVVPPSWSVTYRFAIAAAAMFAFALIRGERLRLDKRAMLFAAALG VAQFALNFNFVYRAEQHITSGLVAVLFALLIVPNTLMGRAFLKTPLEGRFLLGAGIAIVGVGLMILHEYRAAALGAGEVL LGTALTLAGVMSASIANVMQGTAIARAQSMVVMIGWAMLFGALADGAWAWITTGPPVVEPTAVYLGGVLYLGVVASAVTF PLYFNVIRAVGPGQAAWSSVLIPIIAMGFSTAFEDYRWAMLSVAGGIVALIGLVIAVARRPERPSVSGNMVSLPVDSDG
Sequences:
>Translated_319_residues MSAAPTTLLSPRVLLPFLLVTLIWGSTWIVIKGQLGVVPPSWSVTYRFAIAAAAMFAFALIRGERLRLDKRAMLFAAALG VAQFALNFNFVYRAEQHITSGLVAVLFALLIVPNTLMGRAFLKTPLEGRFLLGAGIAIVGVGLMILHEYRAAALGAGEVL LGTALTLAGVMSASIANVMQGTAIARAQSMVVMIGWAMLFGALADGAWAWITTGPPVVEPTAVYLGGVLYLGVVASAVTF PLYFNVIRAVGPGQAAWSSVLIPIIAMGFSTAFEDYRWAMLSVAGGIVALIGLVIAVARRPERPSVSGNMVSLPVDSDG >Mature_318_residues SAAPTTLLSPRVLLPFLLVTLIWGSTWIVIKGQLGVVPPSWSVTYRFAIAAAAMFAFALIRGERLRLDKRAMLFAAALGV AQFALNFNFVYRAEQHITSGLVAVLFALLIVPNTLMGRAFLKTPLEGRFLLGAGIAIVGVGLMILHEYRAAALGAGEVLL GTALTLAGVMSASIANVMQGTAIARAQSMVVMIGWAMLFGALADGAWAWITTGPPVVEPTAVYLGGVLYLGVVASAVTFP LYFNVIRAVGPGQAAWSSVLIPIIAMGFSTAFEDYRWAMLSVAGGIVALIGLVIAVARRPERPSVSGNMVSLPVDSDG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 2 DUF6 domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 33534; Mature: 33403
Theoretical pI: Translated: 10.28; Mature: 10.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAAPTTLLSPRVLLPFLLVTLIWGSTWIVIKGQLGVVPPSWSVTYRFAIAAAAMFAFAL CCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH IRGERLRLDKRAMLFAAALGVAQFALNFNFVYRAEQHITSGLVAVLFALLIVPNTLMGRA HCCCHHCHHHHHHHHHHHHHHHHHHHCCHHEEEHHHHHHHHHHHHHHHHHHHCCHHHHHH FLKTPLEGRFLLGAGIAIVGVGLMILHEYRAAALGAGEVLLGTALTLAGVMSASIANVMQ HHCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH GTAIARAQSMVVMIGWAMLFGALADGAWAWITTGPPVVEPTAVYLGGVLYLGVVASAVTF HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH PLYFNVIRAVGPGQAAWSSVLIPIIAMGFSTAFEDYRWAMLSVAGGIVALIGLVIAVARR HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC PERPSVSGNMVSLPVDSDG CCCCCCCCCEEEECCCCCC >Mature Secondary Structure SAAPTTLLSPRVLLPFLLVTLIWGSTWIVIKGQLGVVPPSWSVTYRFAIAAAAMFAFAL CCCCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH IRGERLRLDKRAMLFAAALGVAQFALNFNFVYRAEQHITSGLVAVLFALLIVPNTLMGRA HCCCHHCHHHHHHHHHHHHHHHHHHHCCHHEEEHHHHHHHHHHHHHHHHHHHCCHHHHHH FLKTPLEGRFLLGAGIAIVGVGLMILHEYRAAALGAGEVLLGTALTLAGVMSASIANVMQ HHCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH GTAIARAQSMVVMIGWAMLFGALADGAWAWITTGPPVVEPTAVYLGGVLYLGVVASAVTF HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH PLYFNVIRAVGPGQAAWSSVLIPIIAMGFSTAFEDYRWAMLSVAGGIVALIGLVIAVARR HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC PERPSVSGNMVSLPVDSDG CCCCCCCCCEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9712687; 11677609 [H]