Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is 103485983
Identifier: 103485983
GI number: 103485983
Start: 506982
End: 507839
Strand: Direct
Name: 103485983
Synonym: Sala_0490
Alternate gene names: NA
Gene position: 506982-507839 (Clockwise)
Preceding gene: 103485982
Following gene: 103485984
Centisome position: 15.16
GC content: 65.03
Gene sequence:
>858_bases ATGAGGGGCTGGGAGGGTGTGCTGGAAACGATGACCGATCTTGCTCCCGCCCCGCCACCAACGCGCGTCTATCGCCACCG GCTGCCCACGCGGATCTGGCACTGGGTCAACGCCGTCACCTTGCTCATCCTGCTGATGAGCGGGCTGATGATCTTCAACG CGCACCCGCGCCTCTATTGGGGGCAATATGGCGCCAATGCCGATTATGCCTGGTTCGCGATCGGATCGACGGCAGACACC GGCTATGTGCGCATCGGCGCCGCGCGGGTCGAGACCACCGGGCTGCTCGGTCGCTGGACCGATGCCGAGGGCGTGGAAAA GACCTGGGCCTTCCCCGGCTGGGCGACGATCCCGACCAGCTACAGTCTTGCCGACGGGCGGCGCTGGCATCTGCTCTTCG CGTGGGTGCTCGCGATCAGCCTGACGCTCTACATGCTGTGGACCGCGCTGGGCGGGCATCTGAAGAAGGATCTGCACGTC CGCCGCGACGAATGGTCGCCGCGCCATATCTGGCACGAGATCAAGGATCATGCCCGGCTGCGCTTCCCGACCGGCGCGGC GGCGGCGCGCTATAATATCCTCCAGAAACTCAGCTATATCGGGATCATCTTCATCCTGTTGCCGCTGATGATCGCCACCG GGCTCACCATGTCGCCGGGGATCAACGCCGCGGCGCCGTGGCTGCTCGACCTGTTCGGCGGGCGCCAGTCGGCGCGCTCG ATCCATTTCATTGGCGCCTGGGCGCTCGTCGCCTTCTTTCTTGTCCATATCGTCATGGTGATGCTCGCAGGGCCGGTGAA CGAGCTAAGGTCGATGGTGACGGGCTGGTTCCGCCTGCCCGCGGAGAAGGCGAAATGA
Upstream 100 bases:
>100_bases CAGCCTGCGCAGCCAGTATCGCGAAGCCTATGCGGCGGAGGTCGTCGCGTAACCAAATGGTGCCGGGAACCGAACCCTTT TCAAGCCCGTTCCCTGAAGG
Downstream 100 bases:
>100_bases GCGGGGTGATGATGCCGCGCCGCGAGCTGATCGTCCGCGCAGGCGGTCTCGCCGCCGCGCTGCCGCTGCTCGGCGCATGC GATGCAATCAACGATGCACC
Product: hypothetical protein
Products: NA
Alternate protein names: Transmembrane B-Type Cytochrome Protein; Thiosulfate Reductase Cytochrome B Subunit-Like Protein; HupC/HyaC/HydC Family Protein; Cytochrome B/B6 Domain Protein; Transmembrane Cytochrome B-Type Protein; Sulfite Oxidase
Number of amino acids: Translated: 285; Mature: 285
Protein sequence:
>285_residues MRGWEGVLETMTDLAPAPPPTRVYRHRLPTRIWHWVNAVTLLILLMSGLMIFNAHPRLYWGQYGANADYAWFAIGSTADT GYVRIGAARVETTGLLGRWTDAEGVEKTWAFPGWATIPTSYSLADGRRWHLLFAWVLAISLTLYMLWTALGGHLKKDLHV RRDEWSPRHIWHEIKDHARLRFPTGAAAARYNILQKLSYIGIIFILLPLMIATGLTMSPGINAAAPWLLDLFGGRQSARS IHFIGAWALVAFFLVHIVMVMLAGPVNELRSMVTGWFRLPAEKAK
Sequences:
>Translated_285_residues MRGWEGVLETMTDLAPAPPPTRVYRHRLPTRIWHWVNAVTLLILLMSGLMIFNAHPRLYWGQYGANADYAWFAIGSTADT GYVRIGAARVETTGLLGRWTDAEGVEKTWAFPGWATIPTSYSLADGRRWHLLFAWVLAISLTLYMLWTALGGHLKKDLHV RRDEWSPRHIWHEIKDHARLRFPTGAAAARYNILQKLSYIGIIFILLPLMIATGLTMSPGINAAAPWLLDLFGGRQSARS IHFIGAWALVAFFLVHIVMVMLAGPVNELRSMVTGWFRLPAEKAK >Mature_285_residues MRGWEGVLETMTDLAPAPPPTRVYRHRLPTRIWHWVNAVTLLILLMSGLMIFNAHPRLYWGQYGANADYAWFAIGSTADT GYVRIGAARVETTGLLGRWTDAEGVEKTWAFPGWATIPTSYSLADGRRWHLLFAWVLAISLTLYMLWTALGGHLKKDLHV RRDEWSPRHIWHEIKDHARLRFPTGAAAARYNILQKLSYIGIIFILLPLMIATGLTMSPGINAAAPWLLDLFGGRQSARS IHFIGAWALVAFFLVHIVMVMLAGPVNELRSMVTGWFRLPAEKAK
Specific function: Unknown
COG id: COG4117
COG function: function code C; Thiosulfate reductase cytochrome B subunit (membrane anchoring protein)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32182; Mature: 32182
Theoretical pI: Translated: 10.50; Mature: 10.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRGWEGVLETMTDLAPAPPPTRVYRHRLPTRIWHWVNAVTLLILLMSGLMIFNAHPRLYW CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE GQYGANADYAWFAIGSTADTGYVRIGAARVETTGLLGRWTDAEGVEKTWAFPGWATIPTS CCCCCCCCEEEEEECCCCCCCEEEEEHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCC YSLADGRRWHLLFAWVLAISLTLYMLWTALGGHLKKDLHVRRDEWSPRHIWHEIKDHARL CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCEE RFPTGAAAARYNILQKLSYIGIIFILLPLMIATGLTMSPGINAAAPWLLDLFGGRQSARS ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCHHCCE IHFIGAWALVAFFLVHIVMVMLAGPVNELRSMVTGWFRLPAEKAK EHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHCCC >Mature Secondary Structure MRGWEGVLETMTDLAPAPPPTRVYRHRLPTRIWHWVNAVTLLILLMSGLMIFNAHPRLYW CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE GQYGANADYAWFAIGSTADTGYVRIGAARVETTGLLGRWTDAEGVEKTWAFPGWATIPTS CCCCCCCCEEEEEECCCCCCCEEEEEHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCC YSLADGRRWHLLFAWVLAISLTLYMLWTALGGHLKKDLHVRRDEWSPRHIWHEIKDHARL CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCEE RFPTGAAAARYNILQKLSYIGIIFILLPLMIATGLTMSPGINAAAPWLLDLFGGRQSARS ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCHHCCE IHFIGAWALVAFFLVHIVMVMLAGPVNELRSMVTGWFRLPAEKAK EHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA