Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is 103485975
Identifier: 103485975
GI number: 103485975
Start: 498075
End: 498794
Strand: Direct
Name: 103485975
Synonym: Sala_0482
Alternate gene names: NA
Gene position: 498075-498794 (Clockwise)
Preceding gene: 103485968
Following gene: 103485982
Centisome position: 14.89
GC content: 66.39
Gene sequence:
>720_bases ATGGAAGAGCCGCTCGCCACGCCGACGCCCGGTTATGCGCACCGCGTCGCCATCTATGACATGGACCGCACGATCACCCA CTCGGGGACGTACAGCGGCTTCCTCATTCATGTTGCGCTGCGGCGTCAGCCATGGCGATTGCTGCTTTTGCCGCTCATCG GGCTGGCGGGCGCGGCCTATGCGCTGCGCCTGATCGATCGCGCGCGGTTGAAAGCGATCAATCTGCGGCTGCTCGTCGGC AAGCGGTTTTCCCGCGCCGAAATCGCCCCGCTTGCCGAAAGCTATGCCGACAAAGTCGTCGCGTGCGGCGTGCATCCCGC CGCGCTCGAACAGATTGCGGCGGACCGCGCGGCGGGATATCGGCTGCTGCTCGCGACCGCGTCGTTCCACCTTTATGTCG ATGCGATCGCGCGGCGGCTGGGGATCGACGATGTGCTCGCCACACGGCTCGACGAGCCCGACGGCGCCGATCATATCCAC GCGCGGCTGTCGGGCGACAATTGTTATGGCGATGCCAAGTTTGCGCGCATTTCGGGCTGGCTGACCGACAATGCGATCAC GCGCGAGGACGCGCATATCCGGGCCTATTCGGACCATGTGTCCGATCATCCGATGCTGCGCTTCGCCGACGAAGCCGTCG CGACGACGCCGTCGCGCGGGCTGAAGCGGCTGGCGCCGCGGATGGGGTGGCAGGTGGTCGACTGGCGGGCGCGAAAGTAG
Upstream 100 bases:
>100_bases TGCGGGCGACATTGGATTATTTGCCGGGGCACGGCAAGCGAATCCATGGGACTTGTCGGCAGTGCTTGGCCGCGGCACCG CCGCCTTCTATGAGGAAGCC
Downstream 100 bases:
>100_bases GACGGCGGGTGGCTGTGCTGGAGGCGAAGGTCGGTTTTGGAGTGGTGAGCAGACGTTGAGAAATCCTCCCCATCACTTGC GATGGGGAGGGGGACCGCCG
Product: HAD family hydrolase
Products: NA
Alternate protein names: Phosphoserine Phosphatase; HAD-Superfamily Subfamily IB Hydrolase; HAD-Superfamily Subfamily IB Hydrolase TIGR; HAD-Superfamily Hydrolase; Phosphoserine Phosphatase SerB; Hydrolase; Haloacid Dehalogenase-Like Family Hydrolase; HAD Superfamily Subfamily IB Hydrolase
Number of amino acids: Translated: 239; Mature: 239
Protein sequence:
>239_residues MEEPLATPTPGYAHRVAIYDMDRTITHSGTYSGFLIHVALRRQPWRLLLLPLIGLAGAAYALRLIDRARLKAINLRLLVG KRFSRAEIAPLAESYADKVVACGVHPAALEQIAADRAAGYRLLLATASFHLYVDAIARRLGIDDVLATRLDEPDGADHIH ARLSGDNCYGDAKFARISGWLTDNAITREDAHIRAYSDHVSDHPMLRFADEAVATTPSRGLKRLAPRMGWQVVDWRARK
Sequences:
>Translated_239_residues MEEPLATPTPGYAHRVAIYDMDRTITHSGTYSGFLIHVALRRQPWRLLLLPLIGLAGAAYALRLIDRARLKAINLRLLVG KRFSRAEIAPLAESYADKVVACGVHPAALEQIAADRAAGYRLLLATASFHLYVDAIARRLGIDDVLATRLDEPDGADHIH ARLSGDNCYGDAKFARISGWLTDNAITREDAHIRAYSDHVSDHPMLRFADEAVATTPSRGLKRLAPRMGWQVVDWRARK >Mature_239_residues MEEPLATPTPGYAHRVAIYDMDRTITHSGTYSGFLIHVALRRQPWRLLLLPLIGLAGAAYALRLIDRARLKAINLRLLVG KRFSRAEIAPLAESYADKVVACGVHPAALEQIAADRAAGYRLLLATASFHLYVDAIARRLGIDDVLATRLDEPDGADHIH ARLSGDNCYGDAKFARISGWLTDNAITREDAHIRAYSDHVSDHPMLRFADEAVATTPSRGLKRLAPRMGWQVVDWRARK
Specific function: Unknown
COG id: COG0560
COG function: function code E; Phosphoserine phosphatase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26510; Mature: 26510
Theoretical pI: Translated: 9.54; Mature: 9.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEEPLATPTPGYAHRVAIYDMDRTITHSGTYSGFLIHVALRRQPWRLLLLPLIGLAGAAY CCCCCCCCCCCCEEEEEEEECCCEEECCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHH ALRLIDRARLKAINLRLLVGKRFSRAEIAPLAESYADKVVACGVHPAALEQIAADRAAGY HHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHHCCEEECCCCHHHHHHHHHHHHCCE RLLLATASFHLYVDAIARRLGIDDVLATRLDEPDGADHIHARLSGDNCYGDAKFARISGW EEEEEHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCEEEEEECE LTDNAITREDAHIRAYSDHVSDHPMLRFADEAVATTPSRGLKRLAPRMGWQVVDWRARK ECCCCCCCCCCEEEEECCCCCCCCCEEEHHHHHHCCCHHHHHHHHHHCCCEEEEEECCC >Mature Secondary Structure MEEPLATPTPGYAHRVAIYDMDRTITHSGTYSGFLIHVALRRQPWRLLLLPLIGLAGAAY CCCCCCCCCCCCEEEEEEEECCCEEECCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHH ALRLIDRARLKAINLRLLVGKRFSRAEIAPLAESYADKVVACGVHPAALEQIAADRAAGY HHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHHCCEEECCCCHHHHHHHHHHHHCCE RLLLATASFHLYVDAIARRLGIDDVLATRLDEPDGADHIHARLSGDNCYGDAKFARISGW EEEEEHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCEEEEEECE LTDNAITREDAHIRAYSDHVSDHPMLRFADEAVATTPSRGLKRLAPRMGWQVVDWRARK ECCCCCCCCCCEEEEECCCCCCCCCEEEHHHHHHCCCHHHHHHHHHHCCCEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA