Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is 103485948
Identifier: 103485948
GI number: 103485948
Start: 466957
End: 467709
Strand: Direct
Name: 103485948
Synonym: Sala_0455
Alternate gene names: NA
Gene position: 466957-467709 (Clockwise)
Preceding gene: 103485943
Following gene: 103485949
Centisome position: 13.96
GC content: 68.53
Gene sequence:
>753_bases ATGACGATCGACCCCCAATTTTTCGAGGCGCGCGACGGCGTGCGGCTGGCGTGGCGTGAAACGGGGGAAGGCCGGCCGGT CGTGCTGCTCCATGGCCTGTTTTCGAGCGGCGAGGTCAATTGGATCAAGTTCGGCACCGCGGCGCGCATCGCGGCCGAGG GCTATCGCGTCATCATGCCCGACCTGCGCGTCCATGGGTCGAGCGACGCGCCGCACGACGCGCAGCATTATCCGCCCGAC GTGCTGGTCCGCGACGTGGAGGATCTGGTGGCGCATCTGGGCCTCGTCGATTTCGACCTCGGCGGCTTCTCGCTCGGCGC GCGGACCAGCGTGCGTGCGGTCGTCGCGGGGATGAAGCCGCGGCGCCTGATTCTGGGCGGCATGGGGCTGGCGGGGCTCG CCGGCTGGCAGCGGCGCGGGGCGTTTTTCCGGCGCGCAATCGCCGAATATGAAACGGCGAAGCGCGGCGACGACACCTGG CTGTCGATCCAGTTCATGAAGACGATGAAGGTCGATCGCATCGCCGCGGGGCATTTGCTGGAAAGCTTTACCGACACGCC GCCCGAGGCGCTGGCGGCGCTGACGATGCCGGTGCTTGTCGTCTGCGGCGAGCAGGATCAGGACAATGGATCGGCCGAGG AGCTGGTCGCGGTGCTGGCCGATGCGCGGCTCGCGACGATTCCGGGGACGCACATGTCGAGCGTGACCGAGCCGGCGCTG GGTGAGGCGATCGCGGCCTTCCTGACGGCTTGA
Upstream 100 bases:
>100_bases CGTCGGTGTCGAGCGAGGTCGAGATGCTCAATCAACAGGGTTCGATCCCGCACCCGTTGCCCGGTTGCGTGAGCCCGCGC GGAGCGGGTAAGGCGGGGCC
Downstream 100 bases:
>100_bases CCCCGCCCGCATGGCGCGTCAAGCTGGCGCCATCGCGTTCCAGATCTCGATCTTTTCGACTGGCCGTAAAAAGTTTGGGT GTCCCCGCGAAGGCGGGGAT
Product: alpha/beta hydrolase fold
Products: NA
Alternate protein names: Alpha/Beta Hydrolase Fold Protein; Hydrolase; Alpha/Beta Hydrolase; Hydrolase Protein; Hydrolase Family Protein; Hydrolase Alpha/Beta Hydrolase Fold Family; Lysophospholipase; Chloride Peroxidase; Alpha/Beta Fold Family Hydrolase; Hydrolase Alpha/Beta Fold Family; Hydrolase Alpha/Beta Fold Family Protein
Number of amino acids: Translated: 250; Mature: 249
Protein sequence:
>250_residues MTIDPQFFEARDGVRLAWRETGEGRPVVLLHGLFSSGEVNWIKFGTAARIAAEGYRVIMPDLRVHGSSDAPHDAQHYPPD VLVRDVEDLVAHLGLVDFDLGGFSLGARTSVRAVVAGMKPRRLILGGMGLAGLAGWQRRGAFFRRAIAEYETAKRGDDTW LSIQFMKTMKVDRIAAGHLLESFTDTPPEALAALTMPVLVVCGEQDQDNGSAEELVAVLADARLATIPGTHMSSVTEPAL GEAIAAFLTA
Sequences:
>Translated_250_residues MTIDPQFFEARDGVRLAWRETGEGRPVVLLHGLFSSGEVNWIKFGTAARIAAEGYRVIMPDLRVHGSSDAPHDAQHYPPD VLVRDVEDLVAHLGLVDFDLGGFSLGARTSVRAVVAGMKPRRLILGGMGLAGLAGWQRRGAFFRRAIAEYETAKRGDDTW LSIQFMKTMKVDRIAAGHLLESFTDTPPEALAALTMPVLVVCGEQDQDNGSAEELVAVLADARLATIPGTHMSSVTEPAL GEAIAAFLTA >Mature_249_residues TIDPQFFEARDGVRLAWRETGEGRPVVLLHGLFSSGEVNWIKFGTAARIAAEGYRVIMPDLRVHGSSDAPHDAQHYPPDV LVRDVEDLVAHLGLVDFDLGGFSLGARTSVRAVVAGMKPRRLILGGMGLAGLAGWQRRGAFFRRAIAEYETAKRGDDTWL SIQFMKTMKVDRIAAGHLLESFTDTPPEALAALTMPVLVVCGEQDQDNGSAEELVAVLADARLATIPGTHMSSVTEPALG EAIAAFLTA
Specific function: Unknown
COG id: COG0596
COG function: function code R; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26949; Mature: 26818
Theoretical pI: Translated: 5.33; Mature: 5.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIDPQFFEARDGVRLAWRETGEGRPVVLLHGLFSSGEVNWIKFGTAARIAAEGYRVIMP CCCCCCHHHCCCCCEEEEEECCCCCCEEEEEECCCCCCEEEEEECCHHHHHHCCCEEEEC DLRVHGSSDAPHDAQHYPPDVLVRDVEDLVAHLGLVDFDLGGFSLGARTSVRAVVAGMKP CEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHHHCCCC RRLILGGMGLAGLAGWQRRGAFFRRAIAEYETAKRGDDTWLSIQFMKTMKVDRIAAGHLL CEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHH ESFTDTPPEALAALTMPVLVVCGEQDQDNGSAEELVAVLADARLATIPGTHMSSVTEPAL HHHCCCCHHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHCCCEEECCCCHHHHCCCHHH GEAIAAFLTA HHHHHHHHCC >Mature Secondary Structure TIDPQFFEARDGVRLAWRETGEGRPVVLLHGLFSSGEVNWIKFGTAARIAAEGYRVIMP CCCCCHHHCCCCCEEEEEECCCCCCEEEEEECCCCCCEEEEEECCHHHHHHCCCEEEEC DLRVHGSSDAPHDAQHYPPDVLVRDVEDLVAHLGLVDFDLGGFSLGARTSVRAVVAGMKP CEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHHHCCCC RRLILGGMGLAGLAGWQRRGAFFRRAIAEYETAKRGDDTWLSIQFMKTMKVDRIAAGHLL CEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHH ESFTDTPPEALAALTMPVLVVCGEQDQDNGSAEELVAVLADARLATIPGTHMSSVTEPAL HHHCCCCHHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHCCCEEECCCCHHHHCCCHHH GEAIAAFLTA HHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA