Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is 103485751
Identifier: 103485751
GI number: 103485751
Start: 258297
End: 258668
Strand: Direct
Name: 103485751
Synonym: Sala_0256
Alternate gene names: NA
Gene position: 258297-258668 (Clockwise)
Preceding gene: 103485750
Following gene: 103485752
Centisome position: 7.72
GC content: 61.56
Gene sequence:
>372_bases TTGTCCGACTGGCTTTCGTCCCGTCCCGACAGTCCCCCGTCTCAGCTCGGCGATCATGCGCGTATTCGCGAGATATTGAT TGTGGCGCGATCCCATATTCTGGAGGCAGTCAAGGCACAGCCCATCAGCTCGGGTGAAGCCGTTGGGGTCGCGATCGGAA CCGGATTTGCCGGCTATCTCGCGCCGGCATTGATCAAGGCGTGGAAGATTGCGGCGCTGATTGAGCCGGTGACCGCCGGC GCCGTGGGGGCGGCGGCTGTGCCGATCGGCTATGCTCTCGTTCAAGCGCGCCGCATCGCCTACGCTGCACGCAAGGATCG TATGTTCCGTTCGCTGATCAGGAAACTCGATTCGATTCGAGGCGACTTGTGA
Upstream 100 bases:
>100_bases TCCCTCGGTGCGCCGTGTCGAAGACGAGCACTGGCGCAAGTGGCTGACCCGCTTTCCAGATCTGCGATTGGACCTGAGCG GAAACAAGGGTCACGCGGCA
Downstream 100 bases:
>100_bases CGGGGACAATGGCTGCTCCTCATCGAAAACTCGCTCCCGGCAAACTGGTGATCGCCAGCCATAATGCGGGCAAGGTGCGC GAAATCCGCGCGCTGCTCGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 123; Mature: 122
Protein sequence:
>123_residues MSDWLSSRPDSPPSQLGDHARIREILIVARSHILEAVKAQPISSGEAVGVAIGTGFAGYLAPALIKAWKIAALIEPVTAG AVGAAAVPIGYALVQARRIAYAARKDRMFRSLIRKLDSIRGDL
Sequences:
>Translated_123_residues MSDWLSSRPDSPPSQLGDHARIREILIVARSHILEAVKAQPISSGEAVGVAIGTGFAGYLAPALIKAWKIAALIEPVTAG AVGAAAVPIGYALVQARRIAYAARKDRMFRSLIRKLDSIRGDL >Mature_122_residues SDWLSSRPDSPPSQLGDHARIREILIVARSHILEAVKAQPISSGEAVGVAIGTGFAGYLAPALIKAWKIAALIEPVTAGA VGAAAVPIGYALVQARRIAYAARKDRMFRSLIRKLDSIRGDL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13057; Mature: 12926
Theoretical pI: Translated: 10.75; Mature: 10.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDWLSSRPDSPPSQLGDHARIREILIVARSHILEAVKAQPISSGEAVGVAIGTGFAGYL CCCCCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHH APALIKAWKIAALIEPVTAGAVGAAAVPIGYALVQARRIAYAARKDRMFRSLIRKLDSIR HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GDL CCC >Mature Secondary Structure SDWLSSRPDSPPSQLGDHARIREILIVARSHILEAVKAQPISSGEAVGVAIGTGFAGYL CCCCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHH APALIKAWKIAALIEPVTAGAVGAAAVPIGYALVQARRIAYAARKDRMFRSLIRKLDSIR HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GDL CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA