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The map label for this gene is ydeB [H]

Identifier: 103485742

GI number: 103485742

Start: 251077

End: 251604

Strand: Direct

Name: ydeB [H]

Synonym: Sala_0247

Alternate gene names: 103485742

Gene position: 251077-251604 (Clockwise)

Preceding gene: 103485740

Following gene: 103485745

Centisome position: 7.51

GC content: 58.71

Gene sequence:

>528_bases
ATGTCCGCAAGCACGCTCGTCTTCGAAGTCGGTGACTATGTCGTTTATCCGAAACATGGCGTGGGGCGCGTCATCGAATT
GCAGAAATCCGAAATCGCCGGAATGCAGCTCGAACTTTATGTCCTGCGCTTCGAAAAGGAAAAAATGACCCTTCGCGTCC
CGACCAACAAGGCCGAGGGCGTGGGGATGCGCAAGCTGTCGTCGGACAAGACGCTGAAGGAAGCGTTGCAGGTGCTGACC
ACCAAGCCGAAGGTCAAGCGCACCATGTGGTCGCGCCGCGCGCAGGAATATGAAGCGAAGATCAATTCGGGCGACCTCGT
GTCGATCGCCGAAGTGACGCGCGACCTGTTCCGCGCCGACGACCAGCCCGAACAGAGCTATTCGGAGCGCCAGATCTTCG
AAGCGGCGTCGAGCCGCCTCGCGCGCGAACTCGCCGCGATGGAGGAAAGCGACGAAAAGACCGCACAGGCGAAGATCCTT
CAGATCCTCAACGAACATGCGCCGCTCTATTACGCCGAAAAGGTGTAA

Upstream 100 bases:

>100_bases
GAGCGCCGCCCTGACCGCCCTTGTCCCCCTCGATCCGAGGGCCGGATATACCGCTGTTGACGCGCCGCCCCGTTCGACAA
GGCCAATGAAAGGAACTTGA

Downstream 100 bases:

>100_bases
GGGCGCGGGGTAACGATAAAGGAAAAGGGCGGTCCGAAAGGGCCGCCCTTTTTCTTGTCCCTCTCCCATCGGGAGAGGGT
TGCGCAGCCTTGGCAGCTTG

Product: CarD family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 174

Protein sequence:

>175_residues
MSASTLVFEVGDYVVYPKHGVGRVIELQKSEIAGMQLELYVLRFEKEKMTLRVPTNKAEGVGMRKLSSDKTLKEALQVLT
TKPKVKRTMWSRRAQEYEAKINSGDLVSIAEVTRDLFRADDQPEQSYSERQIFEAASSRLARELAAMEESDEKTAQAKIL
QILNEHAPLYYAEKV

Sequences:

>Translated_175_residues
MSASTLVFEVGDYVVYPKHGVGRVIELQKSEIAGMQLELYVLRFEKEKMTLRVPTNKAEGVGMRKLSSDKTLKEALQVLT
TKPKVKRTMWSRRAQEYEAKINSGDLVSIAEVTRDLFRADDQPEQSYSERQIFEAASSRLARELAAMEESDEKTAQAKIL
QILNEHAPLYYAEKV
>Mature_174_residues
SASTLVFEVGDYVVYPKHGVGRVIELQKSEIAGMQLELYVLRFEKEKMTLRVPTNKAEGVGMRKLSSDKTLKEALQVLTT
KPKVKRTMWSRRAQEYEAKINSGDLVSIAEVTRDLFRADDQPEQSYSERQIFEAASSRLARELAAMEESDEKTAQAKILQ
ILNEHAPLYYAEKV

Specific function: Unknown

COG id: COG1329

COG function: function code K; Transcriptional regulators, similar to M. xanthus CarD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003711 [H]

Pfam domain/function: PF02559 CarD_TRCF [H]

EC number: NA

Molecular weight: Translated: 19916; Mature: 19785

Theoretical pI: Translated: 7.65; Mature: 7.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSASTLVFEVGDYVVYPKHGVGRVIELQKSEIAGMQLELYVLRFEKEKMTLRVPTNKAEG
CCCCEEEEECCCEEEECCCCCCHHEEEHHHHHCCCEEEEEEEEEECCCEEEEECCCCCCC
VGMRKLSSDKTLKEALQVLTTKPKVKRTMWSRRAQEYEAKINSGDLVSIAEVTRDLFRAD
CCCHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHCCC
DQPEQSYSERQIFEAASSRLARELAAMEESDEKTAQAKILQILNEHAPLYYAEKV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEECCC
>Mature Secondary Structure 
SASTLVFEVGDYVVYPKHGVGRVIELQKSEIAGMQLELYVLRFEKEKMTLRVPTNKAEG
CCCEEEEECCCEEEECCCCCCHHEEEHHHHHCCCEEEEEEEEEECCCEEEEECCCCCCC
VGMRKLSSDKTLKEALQVLTTKPKVKRTMWSRRAQEYEAKINSGDLVSIAEVTRDLFRAD
CCCHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHCCC
DQPEQSYSERQIFEAASSRLARELAAMEESDEKTAQAKILQILNEHAPLYYAEKV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]