Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is 103485728
Identifier: 103485728
GI number: 103485728
Start: 239198
End: 239866
Strand: Direct
Name: 103485728
Synonym: Sala_0232
Alternate gene names: NA
Gene position: 239198-239866 (Clockwise)
Preceding gene: 103485725
Following gene: 103485730
Centisome position: 7.15
GC content: 69.66
Gene sequence:
>669_bases ATGATCGACCCAGTTCACGACCCGCGCGCCGCGCTCGACCGGCTATTGTCCGAAAAGGGCGTCGATTATGCACGCCTGTC ACAGGTGATCGGGCGCAATCCCGCCTATATTCAGCAATATATCAAGCGGGGCTCGCCGCGGCGGCTGGCCGAACAGGATC GCGCGCGCATCGCCGCCTATCTGGGGGTGTCGGAGGCGATGCTGGGCGGGCCGGTGGCGCGCGTCGCCACCCCGGCGCGG AGCCGCGGGGCGGGGATGATCCTGGTGCCCAAGCTCGCGATCGGGGCGTCGGCGGGCGCGGGTGCCAGCGTCGATGGCGA GCCGGTCGAGGGTGAGGTCGCCTTCAACCCCAAATGGCTGCGCGACCTTGGCGCCGATCCGCGCGCGCTCAGCATCATCC GCGTTGAGGGCGATTCGATGGCGCCGACGCTCGACGATGGCGACGATATCCTCGTCGATGGCAGCGATGCGGCGGCGCGG CTGCGCGACGGCATCTATGTGCTGCGCATGGACGATGTGCTGATGGTCAAGCGCATCGCGCGCGCGCCGGGGCCGGGGCG CGTGTCGGTCATCAGCGACAATCCGCATTACCGCAGCTGGGACGACCTGCCTTTGTCGGCGATCCGGCTCGTCGGGCGCG TGGTGTGGACGGGGCGGCGGGTCCGGTAA
Upstream 100 bases:
>100_bases TTCGTCCGATAGGATATTTCCTATCTGGTATCCATTTTCCTACTTGTCTAGGAAAAATCCGCTTGCTAGGAAGAAACAGG AAGGACGGGACCAGACGGCG
Downstream 100 bases:
>100_bases GGACGCCTCAGTAAGGCGCGGCCATCAGGGCTTCGATTTCATGGTCGAGCACTTCGGCGCGGCGGCATTGGTCGGCGTCG CCGTCGCGGCATTTTTCGGC
Product: putative phage repressor
Products: NA
Alternate protein names: Prophage; LexA-Family Protein; S24 Family Peptidase; Transcriptional Regulator Repressor
Number of amino acids: Translated: 222; Mature: 222
Protein sequence:
>222_residues MIDPVHDPRAALDRLLSEKGVDYARLSQVIGRNPAYIQQYIKRGSPRRLAEQDRARIAAYLGVSEAMLGGPVARVATPAR SRGAGMILVPKLAIGASAGAGASVDGEPVEGEVAFNPKWLRDLGADPRALSIIRVEGDSMAPTLDDGDDILVDGSDAAAR LRDGIYVLRMDDVLMVKRIARAPGPGRVSVISDNPHYRSWDDLPLSAIRLVGRVVWTGRRVR
Sequences:
>Translated_222_residues MIDPVHDPRAALDRLLSEKGVDYARLSQVIGRNPAYIQQYIKRGSPRRLAEQDRARIAAYLGVSEAMLGGPVARVATPAR SRGAGMILVPKLAIGASAGAGASVDGEPVEGEVAFNPKWLRDLGADPRALSIIRVEGDSMAPTLDDGDDILVDGSDAAAR LRDGIYVLRMDDVLMVKRIARAPGPGRVSVISDNPHYRSWDDLPLSAIRLVGRVVWTGRRVR >Mature_222_residues MIDPVHDPRAALDRLLSEKGVDYARLSQVIGRNPAYIQQYIKRGSPRRLAEQDRARIAAYLGVSEAMLGGPVARVATPAR SRGAGMILVPKLAIGASAGAGASVDGEPVEGEVAFNPKWLRDLGADPRALSIIRVEGDSMAPTLDDGDDILVDGSDAAAR LRDGIYVLRMDDVLMVKRIARAPGPGRVSVISDNPHYRSWDDLPLSAIRLVGRVVWTGRRVR
Specific function: Unknown
COG id: COG2932
COG function: function code K; Predicted transcriptional regulator
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23952; Mature: 23952
Theoretical pI: Translated: 9.92; Mature: 9.92
Prosite motif: PS00501 SPASE_I_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIDPVHDPRAALDRLLSEKGVDYARLSQVIGRNPAYIQQYIKRGSPRRLAEQDRARIAAY CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH LGVSEAMLGGPVARVATPARSRGAGMILVPKLAIGASAGAGASVDGEPVEGEVAFNPKWL HCHHHHHHCCCHHHHCCCCHHCCCCEEEECCEEECCCCCCCCCCCCCCCCCEEEECCHHH RDLGADPRALSIIRVEGDSMAPTLDDGDDILVDGSDAAARLRDGIYVLRMDDVLMVKRIA HHCCCCCCEEEEEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCEEEEEECHHHHHHHHH RAPGPGRVSVISDNPHYRSWDDLPLSAIRLVGRVVWTGRRVR CCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MIDPVHDPRAALDRLLSEKGVDYARLSQVIGRNPAYIQQYIKRGSPRRLAEQDRARIAAY CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH LGVSEAMLGGPVARVATPARSRGAGMILVPKLAIGASAGAGASVDGEPVEGEVAFNPKWL HCHHHHHHCCCHHHHCCCCHHCCCCEEEECCEEECCCCCCCCCCCCCCCCCEEEECCHHH RDLGADPRALSIIRVEGDSMAPTLDDGDDILVDGSDAAARLRDGIYVLRMDDVLMVKRIA HHCCCCCCEEEEEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCEEEEEECHHHHHHHHH RAPGPGRVSVISDNPHYRSWDDLPLSAIRLVGRVVWTGRRVR CCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA