Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

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The map label for this gene is 103485728

Identifier: 103485728

GI number: 103485728

Start: 239198

End: 239866

Strand: Direct

Name: 103485728

Synonym: Sala_0232

Alternate gene names: NA

Gene position: 239198-239866 (Clockwise)

Preceding gene: 103485725

Following gene: 103485730

Centisome position: 7.15

GC content: 69.66

Gene sequence:

>669_bases
ATGATCGACCCAGTTCACGACCCGCGCGCCGCGCTCGACCGGCTATTGTCCGAAAAGGGCGTCGATTATGCACGCCTGTC
ACAGGTGATCGGGCGCAATCCCGCCTATATTCAGCAATATATCAAGCGGGGCTCGCCGCGGCGGCTGGCCGAACAGGATC
GCGCGCGCATCGCCGCCTATCTGGGGGTGTCGGAGGCGATGCTGGGCGGGCCGGTGGCGCGCGTCGCCACCCCGGCGCGG
AGCCGCGGGGCGGGGATGATCCTGGTGCCCAAGCTCGCGATCGGGGCGTCGGCGGGCGCGGGTGCCAGCGTCGATGGCGA
GCCGGTCGAGGGTGAGGTCGCCTTCAACCCCAAATGGCTGCGCGACCTTGGCGCCGATCCGCGCGCGCTCAGCATCATCC
GCGTTGAGGGCGATTCGATGGCGCCGACGCTCGACGATGGCGACGATATCCTCGTCGATGGCAGCGATGCGGCGGCGCGG
CTGCGCGACGGCATCTATGTGCTGCGCATGGACGATGTGCTGATGGTCAAGCGCATCGCGCGCGCGCCGGGGCCGGGGCG
CGTGTCGGTCATCAGCGACAATCCGCATTACCGCAGCTGGGACGACCTGCCTTTGTCGGCGATCCGGCTCGTCGGGCGCG
TGGTGTGGACGGGGCGGCGGGTCCGGTAA

Upstream 100 bases:

>100_bases
TTCGTCCGATAGGATATTTCCTATCTGGTATCCATTTTCCTACTTGTCTAGGAAAAATCCGCTTGCTAGGAAGAAACAGG
AAGGACGGGACCAGACGGCG

Downstream 100 bases:

>100_bases
GGACGCCTCAGTAAGGCGCGGCCATCAGGGCTTCGATTTCATGGTCGAGCACTTCGGCGCGGCGGCATTGGTCGGCGTCG
CCGTCGCGGCATTTTTCGGC

Product: putative phage repressor

Products: NA

Alternate protein names: Prophage; LexA-Family Protein; S24 Family Peptidase; Transcriptional Regulator Repressor

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MIDPVHDPRAALDRLLSEKGVDYARLSQVIGRNPAYIQQYIKRGSPRRLAEQDRARIAAYLGVSEAMLGGPVARVATPAR
SRGAGMILVPKLAIGASAGAGASVDGEPVEGEVAFNPKWLRDLGADPRALSIIRVEGDSMAPTLDDGDDILVDGSDAAAR
LRDGIYVLRMDDVLMVKRIARAPGPGRVSVISDNPHYRSWDDLPLSAIRLVGRVVWTGRRVR

Sequences:

>Translated_222_residues
MIDPVHDPRAALDRLLSEKGVDYARLSQVIGRNPAYIQQYIKRGSPRRLAEQDRARIAAYLGVSEAMLGGPVARVATPAR
SRGAGMILVPKLAIGASAGAGASVDGEPVEGEVAFNPKWLRDLGADPRALSIIRVEGDSMAPTLDDGDDILVDGSDAAAR
LRDGIYVLRMDDVLMVKRIARAPGPGRVSVISDNPHYRSWDDLPLSAIRLVGRVVWTGRRVR
>Mature_222_residues
MIDPVHDPRAALDRLLSEKGVDYARLSQVIGRNPAYIQQYIKRGSPRRLAEQDRARIAAYLGVSEAMLGGPVARVATPAR
SRGAGMILVPKLAIGASAGAGASVDGEPVEGEVAFNPKWLRDLGADPRALSIIRVEGDSMAPTLDDGDDILVDGSDAAAR
LRDGIYVLRMDDVLMVKRIARAPGPGRVSVISDNPHYRSWDDLPLSAIRLVGRVVWTGRRVR

Specific function: Unknown

COG id: COG2932

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23952; Mature: 23952

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: PS00501 SPASE_I_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDPVHDPRAALDRLLSEKGVDYARLSQVIGRNPAYIQQYIKRGSPRRLAEQDRARIAAY
CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH
LGVSEAMLGGPVARVATPARSRGAGMILVPKLAIGASAGAGASVDGEPVEGEVAFNPKWL
HCHHHHHHCCCHHHHCCCCHHCCCCEEEECCEEECCCCCCCCCCCCCCCCCEEEECCHHH
RDLGADPRALSIIRVEGDSMAPTLDDGDDILVDGSDAAARLRDGIYVLRMDDVLMVKRIA
HHCCCCCCEEEEEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCEEEEEECHHHHHHHHH
RAPGPGRVSVISDNPHYRSWDDLPLSAIRLVGRVVWTGRRVR
CCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MIDPVHDPRAALDRLLSEKGVDYARLSQVIGRNPAYIQQYIKRGSPRRLAEQDRARIAAY
CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH
LGVSEAMLGGPVARVATPARSRGAGMILVPKLAIGASAGAGASVDGEPVEGEVAFNPKWL
HCHHHHHHCCCHHHHCCCCHHCCCCEEEECCEEECCCCCCCCCCCCCCCCCEEEECCHHH
RDLGADPRALSIIRVEGDSMAPTLDDGDDILVDGSDAAARLRDGIYVLRMDDVLMVKRIA
HHCCCCCCEEEEEEECCCCCCCCCCCCCEEEEECCHHHHHHHCCEEEEEECHHHHHHHHH
RAPGPGRVSVISDNPHYRSWDDLPLSAIRLVGRVVWTGRRVR
CCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA