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The map label for this gene is trbD [H]

Identifier: 222109220

GI number: 222109220

Start: 126009

End: 126308

Strand: Reverse

Name: trbD [H]

Synonym: Avi_9658

Alternate gene names: 222109220

Gene position: 126308-126009 (Counterclockwise)

Preceding gene: 222109221

Following gene: 222109219

Centisome position: 96.84

GC content: 61.33

Gene sequence:

>300_bases
ATGGCTGAAGGGACGAGCCGTCTGGACAGGGTGCGAATTCATCGAGCTCTCTCACGGCCGGCCCTGCTGTTCGGGGCTGA
CCGCGAGCTGGTCCTGATGACCGGGCTGACTGCGGTCATCCTCATTTTCGTGGTTCTGACGCTCGTCTCCGCCGCGGTCG
GCTTCATCATCTGGATTGTCGTCGTCGGTCTACTGCGCATGATGGCAAAGGCCGATCCACTCATGCGGCAGGTCTATCTC
CGCCACATGAAGTACCGCTCCCACTACCGGCCAACCTCCAGCCCATGGAGGAAGCACTGA

Upstream 100 bases:

>100_bases
CTTCTTGGCGCGACACAGGTTGTCGGCCTGTTCGGCGGGGGAGGGGCGTCGATTGGCGTTCCTCTCGAGGCAACGCAGGA
CGTGACGCTGGACAGGGCGC

Downstream 100 bases:

>100_bases
GTTATGGTTTCCCTCAAGAAATTTCGCCATACCGGCGCGTCCTTCTCCGACCTCGTGCCTTATGCCGGTCTCGTTGACAA
CGGCATCATGCTTCTTAAGG

Product: conjugal transfer protein TrbD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 99; Mature: 98

Protein sequence:

>99_residues
MAEGTSRLDRVRIHRALSRPALLFGADRELVLMTGLTAVILIFVVLTLVSAAVGFIIWIVVVGLLRMMAKADPLMRQVYL
RHMKYRSHYRPTSSPWRKH

Sequences:

>Translated_99_residues
MAEGTSRLDRVRIHRALSRPALLFGADRELVLMTGLTAVILIFVVLTLVSAAVGFIIWIVVVGLLRMMAKADPLMRQVYL
RHMKYRSHYRPTSSPWRKH
>Mature_98_residues
AEGTSRLDRVRIHRALSRPALLFGADRELVLMTGLTAVILIFVVLTLVSAAVGFIIWIVVVGLLRMMAKADPLMRQVYLR
HMKYRSHYRPTSSPWRKH

Specific function: Unknown

COG id: COG5268

COG function: function code NU; Type IV secretory pathway, TrbD component

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016704
- InterPro:   IPR007792 [H]

Pfam domain/function: PF05101 VirB3 [H]

EC number: NA

Molecular weight: Translated: 11343; Mature: 11212

Theoretical pI: Translated: 12.06; Mature: 12.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.1 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEGTSRLDRVRIHRALSRPALLFGADRELVLMTGLTAVILIFVVLTLVSAAVGFIIWIV
CCCCHHHHHHHHHHHHHCCCHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVGLLRMMAKADPLMRQVYLRHMKYRSHYRPTSSPWRKH
HHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
AEGTSRLDRVRIHRALSRPALLFGADRELVLMTGLTAVILIFVVLTLVSAAVGFIIWIV
CCCHHHHHHHHHHHHHCCCHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVGLLRMMAKADPLMRQVYLRHMKYRSHYRPTSSPWRKH
HHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8763954 [H]