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The map label for this gene is traH

Identifier: 222109183

GI number: 222109183

Start: 71566

End: 72201

Strand: Direct

Name: traH

Synonym: Avi_9599

Alternate gene names: NA

Gene position: 71566-72201 (Clockwise)

Preceding gene: 222109182

Following gene: 222109186

Centisome position: 54.87

GC content: 55.82

Gene sequence:

>636_bases
GTGATAATCGATGCAGCATTGATTCAACAATGTGCCGATCCGCGCCTCAGCGTCGAGACCGTGCAGACGTTTGTCGAAGA
GGTCGGCGCGACCGACCATCTGACAGTGACCGTCAAAAGCGGTGATCGCACGTATGCTGTCCCTCGCCCTAAAACAGCCG
AAGAAGCGATGGCACTGGCGCGCGAATATATAGGGCAGGCCGTTGTTCGCGTAGGATTGACGCAGTATCCAGCCGGTCTC
GGTGCGGTCGACAAGAGCCAGCTCAGCATGGATCTTTTCGAGCCGTGCCATAATCTTCGGATGGGCACTGCACTTTTTGC
AAAGATCTACCGCATCGTGACGAAATGGTATGGTAACCCGCGGTCGGAGGCCTTCGATGACGCGCTATGGTCATATGGAA
CCGGCGTGTTTGAAGGAGAACGCATATTTTATGCCGAAGATCCGGGCGACGTGAAGCTTGCAGAGCCGAAGGCGACGGAG
TCTCAAGAGACCGGAGTATCCTCGGCCGAGGCAACGTCCGATGAGGGTCCTTCCGAGCCTCCATTCAAGAGTGAGGACCC
CAACAAAGCGAGTATGCGGATCGATCTAAGCGGCATCAAAGCCCATAATTCCGAACCGAAGAGCACAGGCGAATGA

Upstream 100 bases:

>100_bases
GTGCGGGCAGAGCTCCAACACGGACCGACATTGGTTATCGTCGGCACAGCGATCAATGGCTATGGCAGTCTGATCGCCGG
CAACTTTTTTGGATGGTGAT

Downstream 100 bases:

>100_bases
ACGCTCACATCCTCGTCACGATCATGCTGTGCACCCTGCAGTGCGAGCCGACGGAGGTCCGCATATGGGACGGTGATACG
TTCCGCATTGGAAGCCGTAG

Product: conjugal transfer protein TraH

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MIIDAALIQQCADPRLSVETVQTFVEEVGATDHLTVTVKSGDRTYAVPRPKTAEEAMALAREYIGQAVVRVGLTQYPAGL
GAVDKSQLSMDLFEPCHNLRMGTALFAKIYRIVTKWYGNPRSEAFDDALWSYGTGVFEGERIFYAEDPGDVKLAEPKATE
SQETGVSSAEATSDEGPSEPPFKSEDPNKASMRIDLSGIKAHNSEPKSTGE

Sequences:

>Translated_211_residues
MIIDAALIQQCADPRLSVETVQTFVEEVGATDHLTVTVKSGDRTYAVPRPKTAEEAMALAREYIGQAVVRVGLTQYPAGL
GAVDKSQLSMDLFEPCHNLRMGTALFAKIYRIVTKWYGNPRSEAFDDALWSYGTGVFEGERIFYAEDPGDVKLAEPKATE
SQETGVSSAEATSDEGPSEPPFKSEDPNKASMRIDLSGIKAHNSEPKSTGE
>Mature_211_residues
MIIDAALIQQCADPRLSVETVQTFVEEVGATDHLTVTVKSGDRTYAVPRPKTAEEAMALAREYIGQAVVRVGLTQYPAGL
GAVDKSQLSMDLFEPCHNLRMGTALFAKIYRIVTKWYGNPRSEAFDDALWSYGTGVFEGERIFYAEDPGDVKLAEPKATE
SQETGVSSAEATSDEGPSEPPFKSEDPNKASMRIDLSGIKAHNSEPKSTGE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To A.tumefaciens Ti plasmid conjugal transfer region I ORFR2 and ORFR3 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010680 [H]

Pfam domain/function: PF06871 TraH_2 [H]

EC number: NA

Molecular weight: Translated: 22937; Mature: 22937

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIDAALIQQCADPRLSVETVQTFVEEVGATDHLTVTVKSGDRTYAVPRPKTAEEAMALA
CCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCEEEECCCCCCHHHHHHHH
REYIGQAVVRVGLTQYPAGLGAVDKSQLSMDLFEPCHNLRMGTALFAKIYRIVTKWYGNP
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RSEAFDDALWSYGTGVFEGERIFYAEDPGDVKLAEPKATESQETGVSSAEATSDEGPSEP
CHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCCC
PFKSEDPNKASMRIDLSGIKAHNSEPKSTGE
CCCCCCCCCCEEEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MIIDAALIQQCADPRLSVETVQTFVEEVGATDHLTVTVKSGDRTYAVPRPKTAEEAMALA
CCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCEEEECCCCCCHHHHHHHH
REYIGQAVVRVGLTQYPAGLGAVDKSQLSMDLFEPCHNLRMGTALFAKIYRIVTKWYGNP
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RSEAFDDALWSYGTGVFEGERIFYAEDPGDVKLAEPKATESQETGVSSAEATSDEGPSEP
CHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEECCCCCCHHHCCCCCCCCCCCCCCCCC
PFKSEDPNKASMRIDLSGIKAHNSEPKSTGE
CCCCCCCCCCEEEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]