Definition Agrobacterium vitis S4 plasmid pAtS4b, complete sequence.
Accession NC_011991
Length 130,435

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The map label for this gene is 222109137

Identifier: 222109137

GI number: 222109137

Start: 20632

End: 22509

Strand: Direct

Name: 222109137

Synonym: Avi_9525

Alternate gene names: NA

Gene position: 20632-22509 (Clockwise)

Preceding gene: 222109136

Following gene: 222109140

Centisome position: 15.82

GC content: 53.14

Gene sequence:

>1878_bases
ATGACCATGAATTCGCGGAAAAGCTCAACGCTGGGGAACCTGGACATGTCCAACGGTGATCGTTTCGCCATAATTTCCGT
AGGTGGGAAGGGTTACGATGTTCTTCTCAAAGAGTTGAGTTCCGCTGCACCAGGCCTCCTTTTTGGCAGTGCGGCTTCGA
TTTTCGAACCAACGCTCTTGCAAGGCGGACGCCCTACATCCCAAGCTGTCGCCCGCGCTCTTTGCGAGGCAGCGGGTGTC
GATGCAACAGCGTTCGCGTCGGCCATCGAGGGCGCTGCTTACGAAGCACTACTGCAGGAACATCCCGTTCGATCGAGATT
ATCACGAGTTTTTTCAAACTACTTTCTACGCTTTGGCGCTGCTCAAGGTCAGGAGACTGTCAGGTTCAATAAATGCCATC
AAGCGATAGCCCATCTGCTGTCGCAAGGACGACTGTCGGGCGCTGTCACAACCAATTATGATACCTGCCTGGAGCAGGCA
TATGAGGATCTGCGGGCTACAAATTCTCTCAACACAATAGTCCAGCGGAACGATGCTGCGAAGAAGGTAGCCTTGGCTGA
GGAACCGGCTCCGGCACCGACCCTTTTCAAATTACACGGTTGTGCGCGGCACCCAAAAAGCATGATCTTTTCTCTGGAAC
AGGAAAAGGAGATGCCCGCCTGGAAAAAACAGACGATGGGATCCTTGTTGGGTAAGACTGTACTGGTGCTCGGATACTCA
GGTCTGGATTTTGAAGTTTGTCCAGAGTTGTATGATCTGAACATCGATAACCTGTACTGGATGGCCTGGGGAAAAAATGG
CGTCCCGGATCTTACGTCGAATGCCATAAAGGTTCTGAACAAGGAAAGACGCCGATCAACGGTCATTTGCGGGGATCTCT
GCGTGTTCCTGTCGGACATGACGCCGCTTCTTTCTCAGGATCTGCCAGAGGTCAAAAACCCCGTGGTGCCGACTTTGTTG
TCAGACAAACTCCTCGACGCGCTCGACCAAAGCGGCCGACGATTGTGGGCGGCCCGCGCGTTCGTCATGTTGAGCATTCC
GGCGGCAGCAACTTCAGCTCTTCGTTTGGAGCGGGCTGGATCGGAAGACCAAATTCTGTCGCGTGATTTCGAACTTGTCC
GCTTGGGCGCGCTCAATCACAGTATGAGATACTATGATAACGCGGATGCCAACAAAGAGCTGTCAGACGATGCGTCTTTG
CCGTTGAGGGATCGAATTGGTCATGCAATAGGCGAGTCCGGCGCCTGTTCCATGGCCGGCGACGAAAAGCGATCCCGCGA
GGCTCTCACCCGCGCGCGCGATCTGACGCACAATCTGACTAATCCATTACACCGCAAGCGCCTTCTGATCAAAACCGAAT
GGATGGACCTGTTGCTACAAACGGCCGAACGCGATCTCAAGGATTCGAAATTGAAGGAAAACCTGATAGTCCGCTTCCGC
GCATTACAGCGCAGAGCATACAAAACAGGCGAACACATCCTTGTCGACCTCTGTGAGCAGGAAGTGGCACAACTGTCCGA
CGTCAGCGTCGCTGCTATACATTCTGGAAAGGAGCGACCGTCCGGTGACATATTTGAGCAAATAGGGAACTACGTCGGTC
AAGTGACGGCTTTGGACACACGGACGCAGCAGACCGGATCAACCGAGCTGGCAAGCCAACTTAGAAAGCGGCTTGAAAAA
ATGCCTCTGTACGGGCTTCCGACTTGGCGGGTGTACAGGACACTGATCGATTTCGCGGCTACGCTCGATGAAAGAGAGAA
CTTGTACCGGTTGTTCGAAGAGTCGATTGCCAACTGCCAATTTCATCCCGACTACGTTCTGCGCGTACAAGAATCCACTC
GACAAAAAGTTATAACGCCGCTTTGGTCAGTGACGTAA

Upstream 100 bases:

>100_bases
GCGGAGCTACCCCGCAGATACCGTCAAGCGTATTGGAGCAGAACAACAATAGCCTGCTTCAGTTGCAGTTGGATAGGAGC
ACACTTGATCTGGACCGATA

Downstream 100 bases:

>100_bases
GAGCGGCGACTTGCAATCACGCGCCGGGGCGACTGGCTTGAACGGTCTGTTAGGAAAAGGTCCGCACGCCCCAAATTCAG
TAGGAAAGAGCATGTGCATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 625; Mature: 624

Protein sequence:

>625_residues
MTMNSRKSSTLGNLDMSNGDRFAIISVGGKGYDVLLKELSSAAPGLLFGSAASIFEPTLLQGGRPTSQAVARALCEAAGV
DATAFASAIEGAAYEALLQEHPVRSRLSRVFSNYFLRFGAAQGQETVRFNKCHQAIAHLLSQGRLSGAVTTNYDTCLEQA
YEDLRATNSLNTIVQRNDAAKKVALAEEPAPAPTLFKLHGCARHPKSMIFSLEQEKEMPAWKKQTMGSLLGKTVLVLGYS
GLDFEVCPELYDLNIDNLYWMAWGKNGVPDLTSNAIKVLNKERRRSTVICGDLCVFLSDMTPLLSQDLPEVKNPVVPTLL
SDKLLDALDQSGRRLWAARAFVMLSIPAAATSALRLERAGSEDQILSRDFELVRLGALNHSMRYYDNADANKELSDDASL
PLRDRIGHAIGESGACSMAGDEKRSREALTRARDLTHNLTNPLHRKRLLIKTEWMDLLLQTAERDLKDSKLKENLIVRFR
ALQRRAYKTGEHILVDLCEQEVAQLSDVSVAAIHSGKERPSGDIFEQIGNYVGQVTALDTRTQQTGSTELASQLRKRLEK
MPLYGLPTWRVYRTLIDFAATLDERENLYRLFEESIANCQFHPDYVLRVQESTRQKVITPLWSVT

Sequences:

>Translated_625_residues
MTMNSRKSSTLGNLDMSNGDRFAIISVGGKGYDVLLKELSSAAPGLLFGSAASIFEPTLLQGGRPTSQAVARALCEAAGV
DATAFASAIEGAAYEALLQEHPVRSRLSRVFSNYFLRFGAAQGQETVRFNKCHQAIAHLLSQGRLSGAVTTNYDTCLEQA
YEDLRATNSLNTIVQRNDAAKKVALAEEPAPAPTLFKLHGCARHPKSMIFSLEQEKEMPAWKKQTMGSLLGKTVLVLGYS
GLDFEVCPELYDLNIDNLYWMAWGKNGVPDLTSNAIKVLNKERRRSTVICGDLCVFLSDMTPLLSQDLPEVKNPVVPTLL
SDKLLDALDQSGRRLWAARAFVMLSIPAAATSALRLERAGSEDQILSRDFELVRLGALNHSMRYYDNADANKELSDDASL
PLRDRIGHAIGESGACSMAGDEKRSREALTRARDLTHNLTNPLHRKRLLIKTEWMDLLLQTAERDLKDSKLKENLIVRFR
ALQRRAYKTGEHILVDLCEQEVAQLSDVSVAAIHSGKERPSGDIFEQIGNYVGQVTALDTRTQQTGSTELASQLRKRLEK
MPLYGLPTWRVYRTLIDFAATLDERENLYRLFEESIANCQFHPDYVLRVQESTRQKVITPLWSVT
>Mature_624_residues
TMNSRKSSTLGNLDMSNGDRFAIISVGGKGYDVLLKELSSAAPGLLFGSAASIFEPTLLQGGRPTSQAVARALCEAAGVD
ATAFASAIEGAAYEALLQEHPVRSRLSRVFSNYFLRFGAAQGQETVRFNKCHQAIAHLLSQGRLSGAVTTNYDTCLEQAY
EDLRATNSLNTIVQRNDAAKKVALAEEPAPAPTLFKLHGCARHPKSMIFSLEQEKEMPAWKKQTMGSLLGKTVLVLGYSG
LDFEVCPELYDLNIDNLYWMAWGKNGVPDLTSNAIKVLNKERRRSTVICGDLCVFLSDMTPLLSQDLPEVKNPVVPTLLS
DKLLDALDQSGRRLWAARAFVMLSIPAAATSALRLERAGSEDQILSRDFELVRLGALNHSMRYYDNADANKELSDDASLP
LRDRIGHAIGESGACSMAGDEKRSREALTRARDLTHNLTNPLHRKRLLIKTEWMDLLLQTAERDLKDSKLKENLIVRFRA
LQRRAYKTGEHILVDLCEQEVAQLSDVSVAAIHSGKERPSGDIFEQIGNYVGQVTALDTRTQQTGSTELASQLRKRLEKM
PLYGLPTWRVYRTLIDFAATLDERENLYRLFEESIANCQFHPDYVLRVQESTRQKVITPLWSVT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 69468; Mature: 69337

Theoretical pI: Translated: 7.52; Mature: 7.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMNSRKSSTLGNLDMSNGDRFAIISVGGKGYDVLLKELSSAAPGLLFGSAASIFEPTLL
CCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCEEECCHHHHHCHHHH
QGGRPTSQAVARALCEAAGVDATAFASAIEGAAYEALLQEHPVRSRLSRVFSNYFLRFGA
CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
AQGQETVRFNKCHQAIAHLLSQGRLSGAVTTNYDTCLEQAYEDLRATNSLNTIVQRNDAA
CCCCHHHHHHHHHHHHHHHHHCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHCCCHH
KKVALAEEPAPAPTLFKLHGCARHPKSMIFSLEQEKEMPAWKKQTMGSLLGKTVLVLGYS
HHHHCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEECC
GLDFEVCPELYDLNIDNLYWMAWGKNGVPDLTSNAIKVLNKERRRSTVICGDLCVFLSDM
CCCHHHCCHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
TPLLSQDLPEVKNPVVPTLLSDKLLDALDQSGRRLWAARAFVMLSIPAAATSALRLERAG
CHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHEECCHHHHHHHHHHHCC
SEDQILSRDFELVRLGALNHSMRYYDNADANKELSDDASLPLRDRIGHAIGESGACSMAG
CHHHHHHCCHHHHEEHHHCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC
DEKRSREALTRARDLTHNLTNPLHRKRLLIKTEWMDLLLQTAERDLKDSKLKENLIVRFR
CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALQRRAYKTGEHILVDLCEQEVAQLSDVSVAAIHSGKERPSGDIFEQIGNYVGQVTALDT
HHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCEECC
RTQQTGSTELASQLRKRLEKMPLYGLPTWRVYRTLIDFAATLDERENLYRLFEESIANCQ
CCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
FHPDYVLRVQESTRQKVITPLWSVT
CCCCCEEEEHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TMNSRKSSTLGNLDMSNGDRFAIISVGGKGYDVLLKELSSAAPGLLFGSAASIFEPTLL
CCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCEEECCHHHHHCHHHH
QGGRPTSQAVARALCEAAGVDATAFASAIEGAAYEALLQEHPVRSRLSRVFSNYFLRFGA
CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
AQGQETVRFNKCHQAIAHLLSQGRLSGAVTTNYDTCLEQAYEDLRATNSLNTIVQRNDAA
CCCCHHHHHHHHHHHHHHHHHCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHCCCHH
KKVALAEEPAPAPTLFKLHGCARHPKSMIFSLEQEKEMPAWKKQTMGSLLGKTVLVLGYS
HHHHCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEECC
GLDFEVCPELYDLNIDNLYWMAWGKNGVPDLTSNAIKVLNKERRRSTVICGDLCVFLSDM
CCCHHHCCHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
TPLLSQDLPEVKNPVVPTLLSDKLLDALDQSGRRLWAARAFVMLSIPAAATSALRLERAG
CHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHEECCHHHHHHHHHHHCC
SEDQILSRDFELVRLGALNHSMRYYDNADANKELSDDASLPLRDRIGHAIGESGACSMAG
CHHHHHHCCHHHHEEHHHCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC
DEKRSREALTRARDLTHNLTNPLHRKRLLIKTEWMDLLLQTAERDLKDSKLKENLIVRFR
CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALQRRAYKTGEHILVDLCEQEVAQLSDVSVAAIHSGKERPSGDIFEQIGNYVGQVTALDT
HHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCEECC
RTQQTGSTELASQLRKRLEKMPLYGLPTWRVYRTLIDFAATLDERENLYRLFEESIANCQ
CCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
FHPDYVLRVQESTRQKVITPLWSVT
CCCCCEEEEHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA