Definition | Agrobacterium vitis S4 plasmid pAtS4b, complete sequence. |
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Accession | NC_011991 |
Length | 130,435 |
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The map label for this gene is 222109137
Identifier: 222109137
GI number: 222109137
Start: 20632
End: 22509
Strand: Direct
Name: 222109137
Synonym: Avi_9525
Alternate gene names: NA
Gene position: 20632-22509 (Clockwise)
Preceding gene: 222109136
Following gene: 222109140
Centisome position: 15.82
GC content: 53.14
Gene sequence:
>1878_bases ATGACCATGAATTCGCGGAAAAGCTCAACGCTGGGGAACCTGGACATGTCCAACGGTGATCGTTTCGCCATAATTTCCGT AGGTGGGAAGGGTTACGATGTTCTTCTCAAAGAGTTGAGTTCCGCTGCACCAGGCCTCCTTTTTGGCAGTGCGGCTTCGA TTTTCGAACCAACGCTCTTGCAAGGCGGACGCCCTACATCCCAAGCTGTCGCCCGCGCTCTTTGCGAGGCAGCGGGTGTC GATGCAACAGCGTTCGCGTCGGCCATCGAGGGCGCTGCTTACGAAGCACTACTGCAGGAACATCCCGTTCGATCGAGATT ATCACGAGTTTTTTCAAACTACTTTCTACGCTTTGGCGCTGCTCAAGGTCAGGAGACTGTCAGGTTCAATAAATGCCATC AAGCGATAGCCCATCTGCTGTCGCAAGGACGACTGTCGGGCGCTGTCACAACCAATTATGATACCTGCCTGGAGCAGGCA TATGAGGATCTGCGGGCTACAAATTCTCTCAACACAATAGTCCAGCGGAACGATGCTGCGAAGAAGGTAGCCTTGGCTGA GGAACCGGCTCCGGCACCGACCCTTTTCAAATTACACGGTTGTGCGCGGCACCCAAAAAGCATGATCTTTTCTCTGGAAC AGGAAAAGGAGATGCCCGCCTGGAAAAAACAGACGATGGGATCCTTGTTGGGTAAGACTGTACTGGTGCTCGGATACTCA GGTCTGGATTTTGAAGTTTGTCCAGAGTTGTATGATCTGAACATCGATAACCTGTACTGGATGGCCTGGGGAAAAAATGG CGTCCCGGATCTTACGTCGAATGCCATAAAGGTTCTGAACAAGGAAAGACGCCGATCAACGGTCATTTGCGGGGATCTCT GCGTGTTCCTGTCGGACATGACGCCGCTTCTTTCTCAGGATCTGCCAGAGGTCAAAAACCCCGTGGTGCCGACTTTGTTG TCAGACAAACTCCTCGACGCGCTCGACCAAAGCGGCCGACGATTGTGGGCGGCCCGCGCGTTCGTCATGTTGAGCATTCC GGCGGCAGCAACTTCAGCTCTTCGTTTGGAGCGGGCTGGATCGGAAGACCAAATTCTGTCGCGTGATTTCGAACTTGTCC GCTTGGGCGCGCTCAATCACAGTATGAGATACTATGATAACGCGGATGCCAACAAAGAGCTGTCAGACGATGCGTCTTTG CCGTTGAGGGATCGAATTGGTCATGCAATAGGCGAGTCCGGCGCCTGTTCCATGGCCGGCGACGAAAAGCGATCCCGCGA GGCTCTCACCCGCGCGCGCGATCTGACGCACAATCTGACTAATCCATTACACCGCAAGCGCCTTCTGATCAAAACCGAAT GGATGGACCTGTTGCTACAAACGGCCGAACGCGATCTCAAGGATTCGAAATTGAAGGAAAACCTGATAGTCCGCTTCCGC GCATTACAGCGCAGAGCATACAAAACAGGCGAACACATCCTTGTCGACCTCTGTGAGCAGGAAGTGGCACAACTGTCCGA CGTCAGCGTCGCTGCTATACATTCTGGAAAGGAGCGACCGTCCGGTGACATATTTGAGCAAATAGGGAACTACGTCGGTC AAGTGACGGCTTTGGACACACGGACGCAGCAGACCGGATCAACCGAGCTGGCAAGCCAACTTAGAAAGCGGCTTGAAAAA ATGCCTCTGTACGGGCTTCCGACTTGGCGGGTGTACAGGACACTGATCGATTTCGCGGCTACGCTCGATGAAAGAGAGAA CTTGTACCGGTTGTTCGAAGAGTCGATTGCCAACTGCCAATTTCATCCCGACTACGTTCTGCGCGTACAAGAATCCACTC GACAAAAAGTTATAACGCCGCTTTGGTCAGTGACGTAA
Upstream 100 bases:
>100_bases GCGGAGCTACCCCGCAGATACCGTCAAGCGTATTGGAGCAGAACAACAATAGCCTGCTTCAGTTGCAGTTGGATAGGAGC ACACTTGATCTGGACCGATA
Downstream 100 bases:
>100_bases GAGCGGCGACTTGCAATCACGCGCCGGGGCGACTGGCTTGAACGGTCTGTTAGGAAAAGGTCCGCACGCCCCAAATTCAG TAGGAAAGAGCATGTGCATA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 625; Mature: 624
Protein sequence:
>625_residues MTMNSRKSSTLGNLDMSNGDRFAIISVGGKGYDVLLKELSSAAPGLLFGSAASIFEPTLLQGGRPTSQAVARALCEAAGV DATAFASAIEGAAYEALLQEHPVRSRLSRVFSNYFLRFGAAQGQETVRFNKCHQAIAHLLSQGRLSGAVTTNYDTCLEQA YEDLRATNSLNTIVQRNDAAKKVALAEEPAPAPTLFKLHGCARHPKSMIFSLEQEKEMPAWKKQTMGSLLGKTVLVLGYS GLDFEVCPELYDLNIDNLYWMAWGKNGVPDLTSNAIKVLNKERRRSTVICGDLCVFLSDMTPLLSQDLPEVKNPVVPTLL SDKLLDALDQSGRRLWAARAFVMLSIPAAATSALRLERAGSEDQILSRDFELVRLGALNHSMRYYDNADANKELSDDASL PLRDRIGHAIGESGACSMAGDEKRSREALTRARDLTHNLTNPLHRKRLLIKTEWMDLLLQTAERDLKDSKLKENLIVRFR ALQRRAYKTGEHILVDLCEQEVAQLSDVSVAAIHSGKERPSGDIFEQIGNYVGQVTALDTRTQQTGSTELASQLRKRLEK MPLYGLPTWRVYRTLIDFAATLDERENLYRLFEESIANCQFHPDYVLRVQESTRQKVITPLWSVT
Sequences:
>Translated_625_residues MTMNSRKSSTLGNLDMSNGDRFAIISVGGKGYDVLLKELSSAAPGLLFGSAASIFEPTLLQGGRPTSQAVARALCEAAGV DATAFASAIEGAAYEALLQEHPVRSRLSRVFSNYFLRFGAAQGQETVRFNKCHQAIAHLLSQGRLSGAVTTNYDTCLEQA YEDLRATNSLNTIVQRNDAAKKVALAEEPAPAPTLFKLHGCARHPKSMIFSLEQEKEMPAWKKQTMGSLLGKTVLVLGYS GLDFEVCPELYDLNIDNLYWMAWGKNGVPDLTSNAIKVLNKERRRSTVICGDLCVFLSDMTPLLSQDLPEVKNPVVPTLL SDKLLDALDQSGRRLWAARAFVMLSIPAAATSALRLERAGSEDQILSRDFELVRLGALNHSMRYYDNADANKELSDDASL PLRDRIGHAIGESGACSMAGDEKRSREALTRARDLTHNLTNPLHRKRLLIKTEWMDLLLQTAERDLKDSKLKENLIVRFR ALQRRAYKTGEHILVDLCEQEVAQLSDVSVAAIHSGKERPSGDIFEQIGNYVGQVTALDTRTQQTGSTELASQLRKRLEK MPLYGLPTWRVYRTLIDFAATLDERENLYRLFEESIANCQFHPDYVLRVQESTRQKVITPLWSVT >Mature_624_residues TMNSRKSSTLGNLDMSNGDRFAIISVGGKGYDVLLKELSSAAPGLLFGSAASIFEPTLLQGGRPTSQAVARALCEAAGVD ATAFASAIEGAAYEALLQEHPVRSRLSRVFSNYFLRFGAAQGQETVRFNKCHQAIAHLLSQGRLSGAVTTNYDTCLEQAY EDLRATNSLNTIVQRNDAAKKVALAEEPAPAPTLFKLHGCARHPKSMIFSLEQEKEMPAWKKQTMGSLLGKTVLVLGYSG LDFEVCPELYDLNIDNLYWMAWGKNGVPDLTSNAIKVLNKERRRSTVICGDLCVFLSDMTPLLSQDLPEVKNPVVPTLLS DKLLDALDQSGRRLWAARAFVMLSIPAAATSALRLERAGSEDQILSRDFELVRLGALNHSMRYYDNADANKELSDDASLP LRDRIGHAIGESGACSMAGDEKRSREALTRARDLTHNLTNPLHRKRLLIKTEWMDLLLQTAERDLKDSKLKENLIVRFRA LQRRAYKTGEHILVDLCEQEVAQLSDVSVAAIHSGKERPSGDIFEQIGNYVGQVTALDTRTQQTGSTELASQLRKRLEKM PLYGLPTWRVYRTLIDFAATLDERENLYRLFEESIANCQFHPDYVLRVQESTRQKVITPLWSVT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 69468; Mature: 69337
Theoretical pI: Translated: 7.52; Mature: 7.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTMNSRKSSTLGNLDMSNGDRFAIISVGGKGYDVLLKELSSAAPGLLFGSAASIFEPTLL CCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCEEECCHHHHHCHHHH QGGRPTSQAVARALCEAAGVDATAFASAIEGAAYEALLQEHPVRSRLSRVFSNYFLRFGA CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC AQGQETVRFNKCHQAIAHLLSQGRLSGAVTTNYDTCLEQAYEDLRATNSLNTIVQRNDAA CCCCHHHHHHHHHHHHHHHHHCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHCCCHH KKVALAEEPAPAPTLFKLHGCARHPKSMIFSLEQEKEMPAWKKQTMGSLLGKTVLVLGYS HHHHCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEECC GLDFEVCPELYDLNIDNLYWMAWGKNGVPDLTSNAIKVLNKERRRSTVICGDLCVFLSDM CCCHHHCCHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC TPLLSQDLPEVKNPVVPTLLSDKLLDALDQSGRRLWAARAFVMLSIPAAATSALRLERAG CHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHEECCHHHHHHHHHHHCC SEDQILSRDFELVRLGALNHSMRYYDNADANKELSDDASLPLRDRIGHAIGESGACSMAG CHHHHHHCCHHHHEEHHHCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC DEKRSREALTRARDLTHNLTNPLHRKRLLIKTEWMDLLLQTAERDLKDSKLKENLIVRFR CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALQRRAYKTGEHILVDLCEQEVAQLSDVSVAAIHSGKERPSGDIFEQIGNYVGQVTALDT HHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCEECC RTQQTGSTELASQLRKRLEKMPLYGLPTWRVYRTLIDFAATLDERENLYRLFEESIANCQ CCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC FHPDYVLRVQESTRQKVITPLWSVT CCCCCEEEEHHHHHHHHHHHHHCCC >Mature Secondary Structure TMNSRKSSTLGNLDMSNGDRFAIISVGGKGYDVLLKELSSAAPGLLFGSAASIFEPTLL CCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCEEECCHHHHHCHHHH QGGRPTSQAVARALCEAAGVDATAFASAIEGAAYEALLQEHPVRSRLSRVFSNYFLRFGA CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC AQGQETVRFNKCHQAIAHLLSQGRLSGAVTTNYDTCLEQAYEDLRATNSLNTIVQRNDAA CCCCHHHHHHHHHHHHHHHHHCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHCCCHH KKVALAEEPAPAPTLFKLHGCARHPKSMIFSLEQEKEMPAWKKQTMGSLLGKTVLVLGYS HHHHCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEECC GLDFEVCPELYDLNIDNLYWMAWGKNGVPDLTSNAIKVLNKERRRSTVICGDLCVFLSDM CCCHHHCCHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC TPLLSQDLPEVKNPVVPTLLSDKLLDALDQSGRRLWAARAFVMLSIPAAATSALRLERAG CHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHEECCHHHHHHHHHHHCC SEDQILSRDFELVRLGALNHSMRYYDNADANKELSDDASLPLRDRIGHAIGESGACSMAG CHHHHHHCCHHHHEEHHHCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC DEKRSREALTRARDLTHNLTNPLHRKRLLIKTEWMDLLLQTAERDLKDSKLKENLIVRFR CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALQRRAYKTGEHILVDLCEQEVAQLSDVSVAAIHSGKERPSGDIFEQIGNYVGQVTALDT HHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCEECC RTQQTGSTELASQLRKRLEKMPLYGLPTWRVYRTLIDFAATLDERENLYRLFEESIANCQ CCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC FHPDYVLRVQESTRQKVITPLWSVT CCCCCEEEEHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA