Definition Agrobacterium vitis S4 plasmid pAtS4b, complete sequence.
Accession NC_011991
Length 130,435

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The map label for this gene is 222109135

Identifier: 222109135

GI number: 222109135

Start: 18787

End: 19353

Strand: Direct

Name: 222109135

Synonym: Avi_9522

Alternate gene names: NA

Gene position: 18787-19353 (Clockwise)

Preceding gene: 222109134

Following gene: 222109136

Centisome position: 14.4

GC content: 51.32

Gene sequence:

>567_bases
ATGCTTCGATATGCTTTGGCGTTCTTGTGCTGCATTTCCTATCCGGGAGTCGTATTAGCAGAACCGTTACCATTTGCCGA
GCCGCCGAGCTTCAAGCAGGCAACTCCAGGCACATTTTCTACGACGGTTGCTACGCAAAACTGCGAGCCCGTTTTTAACG
TAGATTCCAGTGGAAACCGGCATTATCAGCTTGAAGCTAAATGGACCGACCCCGAAAATTCAACGATTTACAATCCGAAC
TTCGAGGCAGTTCGACATGAGCCTGAGAGGGACCATCTGCGGCTGAGAAGCTACAACGGCTGCACGGTCGGTCCCAAGAT
CGAAACAGAACAGGGCAAAACGCTTTTCATCGATCTTGAAAACAAACTGCTCGGTCCCGACCCAAGCTGCATCGATCCTC
ATCATAACGAAGCTAACTGCTTCAACACGATTAACCTCATTTCCATGGCTACCACGGGTCGCCGCGTTCTGAGCTGCGCC
AAATCGGAAACGATACCGAACTCGTCGCTTCCGACGATGTCTTCGTCGAGATCGTTCCTGGAGGGAGGCAGCAATACGAA
TTCGTGA

Upstream 100 bases:

>100_bases
AAATCAATGACAGCGTAGTCCTCTGTTCCCATTCTATTATCGTTTTAGTTGTGTCTCGATACACTCTCTGTTAGCCTTTC
TATAATTGGAGGGTGGGACC

Downstream 100 bases:

>100_bases
TCTCTCCCGATCATCCCGCGGGGACCTTCTGGTATCACTCGCACAGGCAGTCATCATCTTTCGGAACACCATGAAACTGG
GCGAAGTCGTTGCCAACCAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MLRYALAFLCCISYPGVVLAEPLPFAEPPSFKQATPGTFSTTVATQNCEPVFNVDSSGNRHYQLEAKWTDPENSTIYNPN
FEAVRHEPERDHLRLRSYNGCTVGPKIETEQGKTLFIDLENKLLGPDPSCIDPHHNEANCFNTINLISMATTGRRVLSCA
KSETIPNSSLPTMSSSRSFLEGGSNTNS

Sequences:

>Translated_188_residues
MLRYALAFLCCISYPGVVLAEPLPFAEPPSFKQATPGTFSTTVATQNCEPVFNVDSSGNRHYQLEAKWTDPENSTIYNPN
FEAVRHEPERDHLRLRSYNGCTVGPKIETEQGKTLFIDLENKLLGPDPSCIDPHHNEANCFNTINLISMATTGRRVLSCA
KSETIPNSSLPTMSSSRSFLEGGSNTNS
>Mature_188_residues
MLRYALAFLCCISYPGVVLAEPLPFAEPPSFKQATPGTFSTTVATQNCEPVFNVDSSGNRHYQLEAKWTDPENSTIYNPN
FEAVRHEPERDHLRLRSYNGCTVGPKIETEQGKTLFIDLENKLLGPDPSCIDPHHNEANCFNTINLISMATTGRRVLSCA
KSETIPNSSLPTMSSSRSFLEGGSNTNS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20730; Mature: 20730

Theoretical pI: Translated: 5.59; Mature: 5.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.7 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
3.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRYALAFLCCISYPGVVLAEPLPFAEPPSFKQATPGTFSTTVATQNCEPVFNVDSSGNR
CHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCE
HYQLEAKWTDPENSTIYNPNFEAVRHEPERDHLRLRSYNGCTVGPKIETEQGKTLFIDLE
EEEEEEEECCCCCCEEECCCHHHHCCCCCCCCEEEECCCCCEECCEEECCCCCEEEEEEC
NKLLGPDPSCIDPHHNEANCFNTINLISMATTGRRVLSCAKSETIPNSSLPTMSSSRSFL
CCCCCCCCCCCCCCCCCCCHHHHEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCHHH
EGGSNTNS
CCCCCCCC
>Mature Secondary Structure
MLRYALAFLCCISYPGVVLAEPLPFAEPPSFKQATPGTFSTTVATQNCEPVFNVDSSGNR
CHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCE
HYQLEAKWTDPENSTIYNPNFEAVRHEPERDHLRLRSYNGCTVGPKIETEQGKTLFIDLE
EEEEEEEECCCCCCEEECCCHHHHCCCCCCCCEEEECCCCCEECCEEECCCCCEEEEEEC
NKLLGPDPSCIDPHHNEANCFNTINLISMATTGRRVLSCAKSETIPNSSLPTMSSSRSFL
CCCCCCCCCCCCCCCCCCCHHHHEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCHHH
EGGSNTNS
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA