Definition | Agrobacterium vitis S4 plasmid pAtS4b, complete sequence. |
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Accession | NC_011991 |
Length | 130,435 |
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The map label for this gene is 222109134
Identifier: 222109134
GI number: 222109134
Start: 17350
End: 18660
Strand: Direct
Name: 222109134
Synonym: Avi_9521
Alternate gene names: NA
Gene position: 17350-18660 (Clockwise)
Preceding gene: 222109133
Following gene: 222109135
Centisome position: 13.3
GC content: 56.67
Gene sequence:
>1311_bases ATGATTTATGCGAGGCGCGCTTTGCAGCGCCGGCTTGATGAGCTGCGCGTTAAGATTGGCAACGAAGCTGTCGACGCAGT TGTCGCGCGGCTGAATGAACCCGGCAAAGACCGTGTCGCTGCGATGTGGGAAGTCGTCGTGTTGCACGGACTGGCGACGA CGGGCGGTCTCGAAAGCGAGAATGCGCTTCCCTCCGGAAGAAGGCCGGACGTGTGGTTCGACGGTGACGTCATCCGGTTC GTCGCCGATGTCACGAGCGTCTCAGACGACGGGCTCGATGTACAAAATCCGCATGCCGAATTAGGTGAGCTTCTCAATAA GGCGAAAAACAAGCTCAAACTGCCGATAGGTGGTCTCGATATGCGAGTACATTCGCGTGACGAACTCAGCTCCCGTGGGC GGCGCACATTTCTCAAGCTTCCCCCAAGGCGGAAGCTGTCTGAATTTGTTAAAGAAGAGATACTGCCGAAACTTCGCGAG CAGCTCGCAGCCGGGGCCAAAGTTCTGAGAGTGATGATCGCCGACGAAGACGTCGGCATCGAGATCGTGATCGACCCCTC CAAGTCGCCGATTAACTCTTATGGTTTCGCCGCTTATGACGTCCCGACAATCAAGGACAAAAACCCGCTCTATAACGCGC TTAAGGCAAAGGCGGATCAGCTTCGCGGAGCGGAAGGCATAAGCGGGATTATCCTTGGCGACGGGGATTGTGCCGCGCTC GCGGAGCGGCAGGCGTCACCGCGGAGCGTCAGTTGCGAGGCGATCGCCAGAGAATGCCTCCGCCAGTATTCATCACTGGA CTTCGTCTTGCTCCTCACGATACGCGAAGGTAGAAGGTCATTCTTTCCCCCGACTCAACCGGAGCTGCGCACTCACGCGA CGCTAATATGCCGTGATGAGAGCTCGGTAAGAGGAGAACTCGAAACCACATTTCGCGCAATGCTTGAGAAGTTCCCGCGA CCAGTGAATATGCCGGTCAACGGGGCACTGCGCGCGCGCGAAGCACGATATGAAATGGGCCATCACGGAGGTTACAAATT GAGCGGGCAGAAGATCCGGGTCAGCTCCAGAGAACTGGTCGAAGTCCTTGCGGGATTGCGGACATTTGACAACAACGGAG CGCGCAATGTCGAGCTGGCTGGACCTTTGCCCCACAGCACGAGCCACGTCAGCGCGTTGTTTCTGAGGCAGGTCGTGAAT GGTCATCTGCCTGTCAAGATCACGGTTGAGAAGACGGATGAAAATGACAACGACGACTGGATCGAATTCGACTTCGGCGA ACCAGATCCAGCGATCACGCCTTACAAATGA
Upstream 100 bases:
>100_bases GCGTCGTAGTGCATAGGAATGACGTTTGGGTTGAATTGATGGATCGACGTTCAAAGAGTTCGGAAAAGAGCGTTGCGGAC ATGGCAACGCTAGCGTCGGC
Downstream 100 bases:
>100_bases GTTCGTTAGCCGTGCATATCAGGATTAAATCAATGACAGCGTAGTCCTCTGTTCCCATTCTATTATCGTTTTAGTTGTGT CTCGATACACTCTCTGTTAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 436; Mature: 436
Protein sequence:
>436_residues MIYARRALQRRLDELRVKIGNEAVDAVVARLNEPGKDRVAAMWEVVVLHGLATTGGLESENALPSGRRPDVWFDGDVIRF VADVTSVSDDGLDVQNPHAELGELLNKAKNKLKLPIGGLDMRVHSRDELSSRGRRTFLKLPPRRKLSEFVKEEILPKLRE QLAAGAKVLRVMIADEDVGIEIVIDPSKSPINSYGFAAYDVPTIKDKNPLYNALKAKADQLRGAEGISGIILGDGDCAAL AERQASPRSVSCEAIARECLRQYSSLDFVLLLTIREGRRSFFPPTQPELRTHATLICRDESSVRGELETTFRAMLEKFPR PVNMPVNGALRAREARYEMGHHGGYKLSGQKIRVSSRELVEVLAGLRTFDNNGARNVELAGPLPHSTSHVSALFLRQVVN GHLPVKITVEKTDENDNDDWIEFDFGEPDPAITPYK
Sequences:
>Translated_436_residues MIYARRALQRRLDELRVKIGNEAVDAVVARLNEPGKDRVAAMWEVVVLHGLATTGGLESENALPSGRRPDVWFDGDVIRF VADVTSVSDDGLDVQNPHAELGELLNKAKNKLKLPIGGLDMRVHSRDELSSRGRRTFLKLPPRRKLSEFVKEEILPKLRE QLAAGAKVLRVMIADEDVGIEIVIDPSKSPINSYGFAAYDVPTIKDKNPLYNALKAKADQLRGAEGISGIILGDGDCAAL AERQASPRSVSCEAIARECLRQYSSLDFVLLLTIREGRRSFFPPTQPELRTHATLICRDESSVRGELETTFRAMLEKFPR PVNMPVNGALRAREARYEMGHHGGYKLSGQKIRVSSRELVEVLAGLRTFDNNGARNVELAGPLPHSTSHVSALFLRQVVN GHLPVKITVEKTDENDNDDWIEFDFGEPDPAITPYK >Mature_436_residues MIYARRALQRRLDELRVKIGNEAVDAVVARLNEPGKDRVAAMWEVVVLHGLATTGGLESENALPSGRRPDVWFDGDVIRF VADVTSVSDDGLDVQNPHAELGELLNKAKNKLKLPIGGLDMRVHSRDELSSRGRRTFLKLPPRRKLSEFVKEEILPKLRE QLAAGAKVLRVMIADEDVGIEIVIDPSKSPINSYGFAAYDVPTIKDKNPLYNALKAKADQLRGAEGISGIILGDGDCAAL AERQASPRSVSCEAIARECLRQYSSLDFVLLLTIREGRRSFFPPTQPELRTHATLICRDESSVRGELETTFRAMLEKFPR PVNMPVNGALRAREARYEMGHHGGYKLSGQKIRVSSRELVEVLAGLRTFDNNGARNVELAGPLPHSTSHVSALFLRQVVN GHLPVKITVEKTDENDNDDWIEFDFGEPDPAITPYK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48397; Mature: 48397
Theoretical pI: Translated: 7.29; Mature: 7.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIYARRALQRRLDELRVKIGNEAVDAVVARLNEPGKDRVAAMWEVVVLHGLATTGGLESE CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCC NALPSGRRPDVWFDGDVIRFVADVTSVSDDGLDVQNPHAELGELLNKAKNKLKLPIGGLD CCCCCCCCCCEEECCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHEECCCCCCE MRVHSRDELSSRGRRTFLKLPPRRKLSEFVKEEILPKLREQLAAGAKVLRVMIADEDVGI EEECCHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCE EIVIDPSKSPINSYGFAAYDVPTIKDKNPLYNALKAKADQLRGAEGISGIILGDGDCAAL EEEECCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHH AERQASPRSVSCEAIARECLRQYSSLDFVLLLTIREGRRSFFPPTQPELRTHATLICRDE HHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEHHCHHCCCCCCCCCHHCCEEEEECCC SSVRGELETTFRAMLEKFPRPVNMPVNGALRAREARYEMGHHGGYKLSGQKIRVSSRELV CHHCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCEEECCCEEECCHHHHH EVLAGLRTFDNNGARNVELAGPLPHSTSHVSALFLRQVVNGHLPVKITVEKTDENDNDDW HHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCE IEFDFGEPDPAITPYK EEEECCCCCCCCCCCC >Mature Secondary Structure MIYARRALQRRLDELRVKIGNEAVDAVVARLNEPGKDRVAAMWEVVVLHGLATTGGLESE CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCC NALPSGRRPDVWFDGDVIRFVADVTSVSDDGLDVQNPHAELGELLNKAKNKLKLPIGGLD CCCCCCCCCCEEECCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHEECCCCCCE MRVHSRDELSSRGRRTFLKLPPRRKLSEFVKEEILPKLREQLAAGAKVLRVMIADEDVGI EEECCHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCE EIVIDPSKSPINSYGFAAYDVPTIKDKNPLYNALKAKADQLRGAEGISGIILGDGDCAAL EEEECCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHH AERQASPRSVSCEAIARECLRQYSSLDFVLLLTIREGRRSFFPPTQPELRTHATLICRDE HHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEHHCHHCCCCCCCCCHHCCEEEEECCC SSVRGELETTFRAMLEKFPRPVNMPVNGALRAREARYEMGHHGGYKLSGQKIRVSSRELV CHHCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCEEECCCEEECCHHHHH EVLAGLRTFDNNGARNVELAGPLPHSTSHVSALFLRQVVNGHLPVKITVEKTDENDNDDW HHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCE IEFDFGEPDPAITPYK EEEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA