Definition | Agrobacterium vitis S4 plasmid pAtS4b, complete sequence. |
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Accession | NC_011991 |
Length | 130,435 |
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The map label for this gene is 222109133
Identifier: 222109133
GI number: 222109133
Start: 16828
End: 17115
Strand: Direct
Name: 222109133
Synonym: Avi_9520
Alternate gene names: NA
Gene position: 16828-17115 (Clockwise)
Preceding gene: 222109131
Following gene: 222109134
Centisome position: 12.9
GC content: 49.31
Gene sequence:
>288_bases ATGGGTTCGGCCTGGGCAATCGTTTTTGCAGTTGTGCCGTTTCCGTTGAGTCCGACCGTGATACTTCGCCTTGACTGGAG GCCTGACGGGGCATGGAAGAAGTTCAAGCTCGAAAGGCAGCGTGCAAAGCTTGCAAATCAATACCAGGCGAAACACAAGG AAAGGCTTCTATTTTTCCGTGATAACGATCAAGGGCTTCGCAGCCTTGGGATGAAATACAAGGCACCAGTGAACCAAATC GATATCGGAGTGCCATCTCCTATCGTTGATGTGGTTCGAAAATTGTAA
Upstream 100 bases:
>100_bases ATGAAATGGAGCTATGAGATCAGCGATAACCAACAACTGATCACAAGCGATAATCCGGTGTTTTGGGTCAAGGGCGGGGG AGCCTCGGAACTCGGGGGAT
Downstream 100 bases:
>100_bases GGGATCCTATCGCCGAGGAGCTATGCCGCGTTCCATGTTGCTCGTTCCAGCCATTCTGACGAGCCGCGGCGCGGGCTAAC TGCTCGGCAATACATCAAGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 95; Mature: 94
Protein sequence:
>95_residues MGSAWAIVFAVVPFPLSPTVILRLDWRPDGAWKKFKLERQRAKLANQYQAKHKERLLFFRDNDQGLRSLGMKYKAPVNQI DIGVPSPIVDVVRKL
Sequences:
>Translated_95_residues MGSAWAIVFAVVPFPLSPTVILRLDWRPDGAWKKFKLERQRAKLANQYQAKHKERLLFFRDNDQGLRSLGMKYKAPVNQI DIGVPSPIVDVVRKL >Mature_94_residues GSAWAIVFAVVPFPLSPTVILRLDWRPDGAWKKFKLERQRAKLANQYQAKHKERLLFFRDNDQGLRSLGMKYKAPVNQID IGVPSPIVDVVRKL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 10946; Mature: 10815
Theoretical pI: Translated: 11.08; Mature: 11.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGSAWAIVFAVVPFPLSPTVILRLDWRPDGAWKKFKLERQRAKLANQYQAKHKERLLFFR CCCCEEEEEEEECCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEE DNDQGLRSLGMKYKAPVNQIDIGVPSPIVDVVRKL CCCHHHHHCCCCCCCCCCEEECCCCCHHHHHHHCC >Mature Secondary Structure GSAWAIVFAVVPFPLSPTVILRLDWRPDGAWKKFKLERQRAKLANQYQAKHKERLLFFR CCCEEEEEEEECCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEE DNDQGLRSLGMKYKAPVNQIDIGVPSPIVDVVRKL CCCHHHHHCCCCCCCCCCEEECCCCCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA