Definition | Agrobacterium vitis S4 plasmid pAtS4b, complete sequence. |
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Accession | NC_011991 |
Length | 130,435 |
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The map label for this gene is 222109132
Identifier: 222109132
GI number: 222109132
Start: 16434
End: 16715
Strand: Reverse
Name: 222109132
Synonym: Avi_9519
Alternate gene names: NA
Gene position: 16715-16434 (Counterclockwise)
Preceding gene: 222109138
Following gene: 222109130
Centisome position: 12.81
GC content: 51.42
Gene sequence:
>282_bases ATGCATCAAGGTTTCAGCTTGTTGAAATGCGAGAAGCCCGACCCGCCGATCAACGTTCATTGTGAACATATCATTGTCAT GCAGTATTTTTTGTATGGCTTTATCTGCTGCCGATACTTCGCCGCGTGCCTCCTTTTGCCGAAACTCACGGTCCAATTCA TGTCTGTTGCCCCACAAGGCCATCTGGCCCATCGATTGAGCAAATTGCCGAAGCTGAGCTGGACTTCGTGCAAACATCGT GGCGAGAAACGCTGCGAAGTCGAGCTTCGCCACAGGCGCTAG
Upstream 100 bases:
>100_bases CCGAGGCTCCCCCGCCCTTGACCCAAAACACCGGATTATCGCTTGTGATCAGTTGTTGGTTATCGCTGATCTCATAGCTC CATTTCATCCGCGCCATGAG
Downstream 100 bases:
>100_bases AGGCTTAAAGGCTAGCAGATCAGGATAGATAATGCTGCTTGCGACTCGATCTTCGCAAGCGTGTCCTCGATCAAGTCGAT CCGAGCGCCATCCTCACCTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 93; Mature: 93
Protein sequence:
>93_residues MHQGFSLLKCEKPDPPINVHCEHIIVMQYFLYGFICCRYFAACLLLPKLTVQFMSVAPQGHLAHRLSKLPKLSWTSCKHR GEKRCEVELRHRR
Sequences:
>Translated_93_residues MHQGFSLLKCEKPDPPINVHCEHIIVMQYFLYGFICCRYFAACLLLPKLTVQFMSVAPQGHLAHRLSKLPKLSWTSCKHR GEKRCEVELRHRR >Mature_93_residues MHQGFSLLKCEKPDPPINVHCEHIIVMQYFLYGFICCRYFAACLLLPKLTVQFMSVAPQGHLAHRLSKLPKLSWTSCKHR GEKRCEVELRHRR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 10922; Mature: 10922
Theoretical pI: Translated: 9.45; Mature: 9.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
7.5 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 10.8 %Cys+Met (Translated Protein) 7.5 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 10.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHQGFSLLKCEKPDPPINVHCEHIIVMQYFLYGFICCRYFAACLLLPKLTVQFMSVAPQG CCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC HLAHRLSKLPKLSWTSCKHRGEKRCEVELRHRR HHHHHHHHCCCCCCHHHHHCCCCCCCHHCCCCC >Mature Secondary Structure MHQGFSLLKCEKPDPPINVHCEHIIVMQYFLYGFICCRYFAACLLLPKLTVQFMSVAPQG CCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC HLAHRLSKLPKLSWTSCKHRGEKRCEVELRHRR HHHHHHHHCCCCCCHHHHHCCCCCCCHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA