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The map label for this gene is yhcK [H]

Identifier: 222109122

GI number: 222109122

Start: 4953

End: 5690

Strand: Direct

Name: yhcK [H]

Synonym: Avi_9505

Alternate gene names: 222109122

Gene position: 4953-5690 (Clockwise)

Preceding gene: 222109120

Following gene: 222109123

Centisome position: 3.8

GC content: 55.56

Gene sequence:

>738_bases
ATGCGTCGTATTGTAGAGAAGTCGATTGTAACCGGATTGCTATCGGTGTTGGCCTCGCTGGCGATCTCGTTCAGCATTGT
GCCGTTGCTGGGTGGTCAGGTTGCGGGCGCGGGCCTGTTCATGACCATATTTTGTCCGCTGGCGATATCGATCCCGGCGT
CGGCGCTGCATTTCACCCAGTCGGAAAAAGTGCGACGGGCAGAGGCAGCGACGAAAGAAGCTCTGAACAAACTGGCCGAT
GCTTATGAAACCCTCCGTATTCAGTCCCGCAGAGACGGGCTGACCGGCGCTCTCACGCGAAGCGCATTCATGGAAGATCT
GGCTTTGACAAGTCAACGAGGTGGGACCGGAGCCCTGCTGTTCCTGGACCTGGACCACTTCAAATCGATCAACGACCGGT
ATGGTCATGCAACCGGTGATGAAGCTCTTCGCCGCACTGGGCTTGTCCTCGCCCGCTACAAGAGCCAGTCAGATGTCGCG
GGACGTCTTGGCGGTGAGGAATTTGGATTGTTTCAGAGCGATTTGAAGTTCGAACAAATGCGTGATCGTTGCGAGGAGGT
TCGGGAGGAAATCGCCCGTATCGTTTTGCATGCACCATCTGGTTCACAGGTGCGGATTTCCGCGAGCATAGGGGCGTGTC
ATTGCGATCCCGGATTTGATCTATCGGACTGCCTAAAAGCCGCTGACAAAAACCTCTATCAGGCAAAAGCCCTCGGCAGA
AACAGGGTTGTCGCATAG

Upstream 100 bases:

>100_bases
TTTCCAGATATTGGGCACATGAGTTGAGTTTTACTGAAGTGTTTCAACCCTCTTTAAATTCACGAGTTCATAGAAATCCA
TATTTCTCACGGTGATATTT

Downstream 100 bases:

>100_bases
GCATCCAGATAGTGGACTACGCCCGAGCAACTGTGTGGTGGCGGAACGCTACCATCTGGCGAAGCGTGTTCGGTGCGTTT
CTTTTACTACTTTTTCTGTC

Product: GGDEF domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MRRIVEKSIVTGLLSVLASLAISFSIVPLLGGQVAGAGLFMTIFCPLAISIPASALHFTQSEKVRRAEAATKEALNKLAD
AYETLRIQSRRDGLTGALTRSAFMEDLALTSQRGGTGALLFLDLDHFKSINDRYGHATGDEALRRTGLVLARYKSQSDVA
GRLGGEEFGLFQSDLKFEQMRDRCEEVREEIARIVLHAPSGSQVRISASIGACHCDPGFDLSDCLKAADKNLYQAKALGR
NRVVA

Sequences:

>Translated_245_residues
MRRIVEKSIVTGLLSVLASLAISFSIVPLLGGQVAGAGLFMTIFCPLAISIPASALHFTQSEKVRRAEAATKEALNKLAD
AYETLRIQSRRDGLTGALTRSAFMEDLALTSQRGGTGALLFLDLDHFKSINDRYGHATGDEALRRTGLVLARYKSQSDVA
GRLGGEEFGLFQSDLKFEQMRDRCEEVREEIARIVLHAPSGSQVRISASIGACHCDPGFDLSDCLKAADKNLYQAKALGR
NRVVA
>Mature_245_residues
MRRIVEKSIVTGLLSVLASLAISFSIVPLLGGQVAGAGLFMTIFCPLAISIPASALHFTQSEKVRRAEAATKEALNKLAD
AYETLRIQSRRDGLTGALTRSAFMEDLALTSQRGGTGALLFLDLDHFKSINDRYGHATGDEALRRTGLVLARYKSQSDVA
GRLGGEEFGLFQSDLKFEQMRDRCEEVREEIARIVLHAPSGSQVRISASIGACHCDPGFDLSDCLKAADKNLYQAKALGR
NRVVA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI1787262, Length=161, Percent_Identity=30.4347826086957, Blast_Score=97, Evalue=8e-22,
Organism=Escherichia coli, GI1786584, Length=171, Percent_Identity=35.672514619883, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI145693134, Length=156, Percent_Identity=33.974358974359, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI87082007, Length=169, Percent_Identity=34.3195266272189, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI87081881, Length=171, Percent_Identity=33.9181286549708, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI87081977, Length=238, Percent_Identity=31.9327731092437, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1788956, Length=176, Percent_Identity=34.0909090909091, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787056, Length=156, Percent_Identity=33.3333333333333, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788381, Length=164, Percent_Identity=32.3170731707317, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787541, Length=168, Percent_Identity=33.9285714285714, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787816, Length=164, Percent_Identity=33.5365853658537, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787802, Length=205, Percent_Identity=26.3414634146341, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR011620 [H]

Pfam domain/function: PF07694 5TM-5TMR_LYT; PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 26544; Mature: 26544

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: PS01186 EGF_2 ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRIVEKSIVTGLLSVLASLAISFSIVPLLGGQVAGAGLFMTIFCPLAISIPASALHFTQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHH
SEKVRRAEAATKEALNKLADAYETLRIQSRRDGLTGALTRSAFMEDLALTSQRGGTGALL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEE
FLDLDHFKSINDRYGHATGDEALRRTGLVLARYKSQSDVAGRLGGEEFGLFQSDLKFEQM
EEEHHHHHHHHHHCCCCCHHHHHHHHHHHHEECCCCCHHHHHCCCHHHCCHHHHHHHHHH
RDRCEEVREEIARIVLHAPSGSQVRISASIGACHCDPGFDLSDCLKAADKNLYQAKALGR
HHHHHHHHHHHHHHEEECCCCCEEEEEECCCEEECCCCCCHHHHHHHHHHHHHHHHHCCC
NRVVA
CCCCC
>Mature Secondary Structure
MRRIVEKSIVTGLLSVLASLAISFSIVPLLGGQVAGAGLFMTIFCPLAISIPASALHFTQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHH
SEKVRRAEAATKEALNKLADAYETLRIQSRRDGLTGALTRSAFMEDLALTSQRGGTGALL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEE
FLDLDHFKSINDRYGHATGDEALRRTGLVLARYKSQSDVAGRLGGEEFGLFQSDLKFEQM
EEEHHHHHHHHHHCCCCCHHHHHHHHHHHHEECCCCCHHHHHCCCHHHCCHHHHHHHHHH
RDRCEEVREEIARIVLHAPSGSQVRISASIGACHCDPGFDLSDCLKAADKNLYQAKALGR
HHHHHHHHHHHHHHEEECCCCCEEEEEECCCEEECCCCCCHHHHHHHHHHHHHHHHHCCC
NRVVA
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969498; 9384377 [H]