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The map label for this gene is repC [H]

Identifier: 222109120

GI number: 222109120

Start: 2674

End: 3903

Strand: Direct

Name: repC [H]

Synonym: Avi_9503

Alternate gene names: 222109120

Gene position: 2674-3903 (Clockwise)

Preceding gene: 222109119

Following gene: 222109122

Centisome position: 2.05

GC content: 57.48

Gene sequence:

>1230_bases
GTGAGGGCTGAAGAGATGCACACGGGAAATGTAACGACGCCCTTTGGGCGGCGGCCGATGACGCTTGCTCTGGTAAAACG
GCAGATCGCTGACACCGAGATCAGGTCAGGCAAGAGCGCTGACAAATGGATGATCTTTCGTGACGTCAAAGAAGCGCGCG
AGACCTACAAGCTGCCTCCTTATTCGATAGCGGTGCTTGATGCACTACTGACCTTTTATCCTGAAAAGGAATTGCGCCAG
GACGCGCAGCTGATCGTATTTCCTTCGAACGCTCAGCTGATGGTTCGGGCCAACGGGATGTCAGGAGCTACCCTTCGTCG
GCATCTGGCAATCCTTGTCGACGTCGGAATGATTGTCCGCAAGGACAGCCCCAATGGCAAACGATACGCCCGCAAAGACG
GATCAGGGGAAATCGAACGCGCATTCGGATTTGATCTTTCGCCGCTTTTGGCTCGATCCGAGGAGTTTGCGTTGGCCGCT
CAACAGGTGGCGACCGATCGCCGCGAATTCCTCAAGGCCAAGGAGAGCCTTACCCTGTGCCGGCGGGACGTTCGAAAGGT
TATCAGCGCCGCGATCGAGGAGGGGGCTGAAGGCGACTGGGAAGCGGTCGAATCTGTCTATCTGGACATTGTCCGCCGGA
TTCCCCGTACCCCGTCAGCTTCCGACCTTGCACAAGTCCTCGACGAGTTGCAGCTTCTTTTCGACGAAGTCATCAACCGC
TTGGATTTGGTCGATAATTCTGAAGATATAAGCAGCAATGCTGCTCAGAGCGAGCGCCACATACAAAATTCAAAAACCGA
ATCCATCAATGAACTTGAACATAGCTCTGAAAATAAGCAGGGCGCGAAGCCGAGTGAAACCGGTCGGCCGAAGAGGGAGC
CGGTAAAGGCATTCCCACTTGGTATGGTGTTAAGAGCTTGCCCGCAGATAAGCGACTACGGGCCAGGCGGCCAGATCGCA
AGCTGGCGAGACCTGATGTCGGCTGCCGTGGTCGCGCGTTCGATGCTCGGCGTCAGCCCGAGCGCCTATCAAACCGCCTG
TGAAACCCTGGGACCAGAGAATGCAGCCGCTGTCATGGCCTGCATTCTGGAGCGGGGGGGGCACATCAACTCGGCCGGCG
GTTACCTCCGTGCTCTGACGCAACGGGCGGAGAAGGGCGAGTTTTCCCTCGGCCCGATGCTGATGGCCTTGACGCGCGCC
AATGCCGGGAACGATCGACAGGCGGGATGA

Upstream 100 bases:

>100_bases
GCCCTTCTTATAGTGTCGCAACTAGAGAATCGCATTTCCCCGAATCCCAGTCAAGAGTCTTTGGCGCTGTTTTGGCGAGC
GGATTTCTTTTGCCTATTTT

Downstream 100 bases:

>100_bases
GATGGTGATATTCGGCCCTGTTTCCGTCTCACGCAACACTGGTGAGGAAGTTATCCAGCAGGACGTTGAACTCCTTGTGC
CTTTGCCAGTGGAGACCGTG

Product: replication initiation protein RepC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 409; Mature: 409

Protein sequence:

>409_residues
MRAEEMHTGNVTTPFGRRPMTLALVKRQIADTEIRSGKSADKWMIFRDVKEARETYKLPPYSIAVLDALLTFYPEKELRQ
DAQLIVFPSNAQLMVRANGMSGATLRRHLAILVDVGMIVRKDSPNGKRYARKDGSGEIERAFGFDLSPLLARSEEFALAA
QQVATDRREFLKAKESLTLCRRDVRKVISAAIEEGAEGDWEAVESVYLDIVRRIPRTPSASDLAQVLDELQLLFDEVINR
LDLVDNSEDISSNAAQSERHIQNSKTESINELEHSSENKQGAKPSETGRPKREPVKAFPLGMVLRACPQISDYGPGGQIA
SWRDLMSAAVVARSMLGVSPSAYQTACETLGPENAAAVMACILERGGHINSAGGYLRALTQRAEKGEFSLGPMLMALTRA
NAGNDRQAG

Sequences:

>Translated_409_residues
MRAEEMHTGNVTTPFGRRPMTLALVKRQIADTEIRSGKSADKWMIFRDVKEARETYKLPPYSIAVLDALLTFYPEKELRQ
DAQLIVFPSNAQLMVRANGMSGATLRRHLAILVDVGMIVRKDSPNGKRYARKDGSGEIERAFGFDLSPLLARSEEFALAA
QQVATDRREFLKAKESLTLCRRDVRKVISAAIEEGAEGDWEAVESVYLDIVRRIPRTPSASDLAQVLDELQLLFDEVINR
LDLVDNSEDISSNAAQSERHIQNSKTESINELEHSSENKQGAKPSETGRPKREPVKAFPLGMVLRACPQISDYGPGGQIA
SWRDLMSAAVVARSMLGVSPSAYQTACETLGPENAAAVMACILERGGHINSAGGYLRALTQRAEKGEFSLGPMLMALTRA
NAGNDRQAG
>Mature_409_residues
MRAEEMHTGNVTTPFGRRPMTLALVKRQIADTEIRSGKSADKWMIFRDVKEARETYKLPPYSIAVLDALLTFYPEKELRQ
DAQLIVFPSNAQLMVRANGMSGATLRRHLAILVDVGMIVRKDSPNGKRYARKDGSGEIERAFGFDLSPLLARSEEFALAA
QQVATDRREFLKAKESLTLCRRDVRKVISAAIEEGAEGDWEAVESVYLDIVRRIPRTPSASDLAQVLDELQLLFDEVINR
LDLVDNSEDISSNAAQSERHIQNSKTESINELEHSSENKQGAKPSETGRPKREPVKAFPLGMVLRACPQISDYGPGGQIA
SWRDLMSAAVVARSMLGVSPSAYQTACETLGPENAAAVMACILERGGHINSAGGYLRALTQRAEKGEFSLGPMLMALTRA
NAGNDRQAG

Specific function: This protein is coded by a hairy root Ri plasmid, it is probably involved in its replication [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005090
- InterPro:   IPR021760
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03428 RP-C; PF11800 RP-C_C [H]

EC number: NA

Molecular weight: Translated: 45004; Mature: 45004

Theoretical pI: Translated: 7.04; Mature: 7.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAEEMHTGNVTTPFGRRPMTLALVKRQIADTEIRSGKSADKWMIFRDVKEARETYKLPP
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCC
YSIAVLDALLTFYPEKELRQDAQLIVFPSNAQLMVRANGMSGATLRRHLAILVDVGMIVR
HHHHHHHHHHHHCCCHHHCCCCEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHEE
KDSPNGKRYARKDGSGEIERAFGFDLSPLLARSEEFALAAQQVATDRREFLKAKESLTLC
CCCCCCCHHHCCCCCCCHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRDVRKVISAAIEEGAEGDWEAVESVYLDIVRRIPRTPSASDLAQVLDELQLLFDEVINR
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
LDLVDNSEDISSNAAQSERHIQNSKTESINELEHSSENKQGAKPSETGRPKREPVKAFPL
HHCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHH
GMVLRACPQISDYGPGGQIASWRDLMSAAVVARSMLGVSPSAYQTACETLGPENAAAVMA
HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHH
CILERGGHINSAGGYLRALTQRAEKGEFSLGPMLMALTRANAGNDRQAG
HHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MRAEEMHTGNVTTPFGRRPMTLALVKRQIADTEIRSGKSADKWMIFRDVKEARETYKLPP
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCC
YSIAVLDALLTFYPEKELRQDAQLIVFPSNAQLMVRANGMSGATLRRHLAILVDVGMIVR
HHHHHHHHHHHHCCCHHHCCCCEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHEE
KDSPNGKRYARKDGSGEIERAFGFDLSPLLARSEEFALAAQQVATDRREFLKAKESLTLC
CCCCCCCHHHCCCCCCCHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRDVRKVISAAIEEGAEGDWEAVESVYLDIVRRIPRTPSASDLAQVLDELQLLFDEVINR
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
LDLVDNSEDISSNAAQSERHIQNSKTESINELEHSSENKQGAKPSETGRPKREPVKAFPL
HHCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHH
GMVLRACPQISDYGPGGQIASWRDLMSAAVVARSMLGVSPSAYQTACETLGPENAAAVMA
HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHH
CILERGGHINSAGGYLRALTQRAEKGEFSLGPMLMALTRANAGNDRQAG
HHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA