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The map label for this gene is repB [H]

Identifier: 222109119

GI number: 222109119

Start: 1493

End: 2491

Strand: Direct

Name: repB [H]

Synonym: Avi_9502

Alternate gene names: 222109119

Gene position: 1493-2491 (Clockwise)

Preceding gene: 222109118

Following gene: 222109120

Centisome position: 1.14

GC content: 57.46

Gene sequence:

>999_bases
ATGAAGGGCCGTGACATTCTCAAGAATATGGTCAGCTCTGCTGGGGATGAAGCACCGAAGGCGAGCGTTCAGTCCCATCC
ACAGCACAAGCCTGCGGGCGCCGTTCGCGCCATGAACCTTTCGCTTGGCCGTCTCGGTGATGAAGCCGCCGCGGCCAAAG
AGCTGCGGTACGCGCTTGCAGCCGGGGACAAGGTTGTCGAGTTGAGCCCGGGCCAGATTGAGGCCTCGTTCATTCAGGAT
CGTATTCCAACAAACAACGATGCTGCCCTTGAGGAACTGATTGCCTCGATGCGTCAAAGCGGCCAGCAGGTCCCAATCCT
GGTGCGGCCACATCCTTCGAAGGAGAACCATTACCAGGCGGCTTATGGGCACCGCCGATTGCGTGCGGCCATCGCTCTGG
AACGCCCGATCCGAGCGATCGTGCGCCAGCTCTCCGACGAGGAACTGATTGTCGCGCAAGGTCAAGAGAACGGGCCACGC
ATCGATCTCAGTTTTATCGAGCGCGCCCTGTTTGCAAAAAGACTTTTGCAGCATGGTTTTGATCGCGACAGAATCTCCCA
GGCCCTGTCTGTCGACAAGCCTGAGACATCGCGGCTCCTACAGGTCGCGGACGCCATCCCGACAGATATCATCCTGGCAA
TCGGGCCTGCTTCGAAGATCGGACGGCCCCGCTGGTTGGCCTTTGCCGAACTATTGAAGGACAAAGCAGCGGCCGACCGG
ATTGCCGACACCGTCGCCGAAGCTCAGTTCGGAGCAATCGATACGAACGAACGGTTTGCCCGTTTGTGGGCGCAGGCCCA
AGGCCCCAAAGCTTCGAAGAAGGACACCGGCGGTAAGATCCGCACGCGCAAGGGCATCGTTCTCGCATCAATGGAACGAA
CAGCCAAAGGCGCCAAAATCACGGTTACATCAGAAGAGTTCGCACAGTTCCTTGATGCCAGAATGAGCGATCTTGTTGAG
CAGTTCGAAAAAGAAAACTCTTCTGAAACAAACCATTAG

Upstream 100 bases:

>100_bases
GAGAAACTATGAACAGGCAAACCTACGATCGCGCCGTGGAGGCCATGGATGGGGTCAACCTTGAAGTCGAAGCTCTTCTC
AAAAGCTCATGGGGGCGGGC

Downstream 100 bases:

>100_bases
TTCGATTGTCAGCTGACAATCCGATCGCAACCAGGAGATCAAACCGCAAAAGAAAAGGCCCCCAAACGTCGCCGTCGTGG
AAGCCCTTCTTATAGTGTCG

Product: replication protein B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 332; Mature: 332

Protein sequence:

>332_residues
MKGRDILKNMVSSAGDEAPKASVQSHPQHKPAGAVRAMNLSLGRLGDEAAAAKELRYALAAGDKVVELSPGQIEASFIQD
RIPTNNDAALEELIASMRQSGQQVPILVRPHPSKENHYQAAYGHRRLRAAIALERPIRAIVRQLSDEELIVAQGQENGPR
IDLSFIERALFAKRLLQHGFDRDRISQALSVDKPETSRLLQVADAIPTDIILAIGPASKIGRPRWLAFAELLKDKAAADR
IADTVAEAQFGAIDTNERFARLWAQAQGPKASKKDTGGKIRTRKGIVLASMERTAKGAKITVTSEEFAQFLDARMSDLVE
QFEKENSSETNH

Sequences:

>Translated_332_residues
MKGRDILKNMVSSAGDEAPKASVQSHPQHKPAGAVRAMNLSLGRLGDEAAAAKELRYALAAGDKVVELSPGQIEASFIQD
RIPTNNDAALEELIASMRQSGQQVPILVRPHPSKENHYQAAYGHRRLRAAIALERPIRAIVRQLSDEELIVAQGQENGPR
IDLSFIERALFAKRLLQHGFDRDRISQALSVDKPETSRLLQVADAIPTDIILAIGPASKIGRPRWLAFAELLKDKAAADR
IADTVAEAQFGAIDTNERFARLWAQAQGPKASKKDTGGKIRTRKGIVLASMERTAKGAKITVTSEEFAQFLDARMSDLVE
QFEKENSSETNH
>Mature_332_residues
MKGRDILKNMVSSAGDEAPKASVQSHPQHKPAGAVRAMNLSLGRLGDEAAAAKELRYALAAGDKVVELSPGQIEASFIQD
RIPTNNDAALEELIASMRQSGQQVPILVRPHPSKENHYQAAYGHRRLRAAIALERPIRAIVRQLSDEELIVAQGQENGPR
IDLSFIERALFAKRLLQHGFDRDRISQALSVDKPETSRLLQVADAIPTDIILAIGPASKIGRPRWLAFAELLKDKAAADR
IADTVAEAQFGAIDTNERFARLWAQAQGPKASKKDTGGKIRTRKGIVLASMERTAKGAKITVTSEEFAQFLDARMSDLVE
QFEKENSSETNH

Specific function: This protein is coded by a hairy root Ri plasmid, it is probably involved in its replication [H]

COG id: COG1475

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the parB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004437
- InterPro:   IPR003115
- InterPro:   IPR017819
- InterPro:   IPR011111 [H]

Pfam domain/function: PF02195 ParBc; PF07506 RepB [H]

EC number: NA

Molecular weight: Translated: 36378; Mature: 36378

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGRDILKNMVSSAGDEAPKASVQSHPQHKPAGAVRAMNLSLGRLGDEAAAAKELRYALA
CCHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHEEHHHHHHHCCHHHHHHHHHHHHHH
AGDKVVELSPGQIEASFIQDRIPTNNDAALEELIASMRQSGQQVPILVRPHPSKENHYQA
CCCEEEEECCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCHHH
AYGHRRLRAAIALERPIRAIVRQLSDEELIVAQGQENGPRIDLSFIERALFAKRLLQHGF
HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEHHHHHHHHHHHHHHHCCC
DRDRISQALSVDKPETSRLLQVADAIPTDIILAIGPASKIGRPRWLAFAELLKDKAAADR
CHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEECCHHHCCCHHHHHHHHHHHHHHHHHH
IADTVAEAQFGAIDTNERFARLWAQAQGPKASKKDTGGKIRTRKGIVLASMERTAKGAKI
HHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCEEEEEHHHHCCCCEE
TVTSEEFAQFLDARMSDLVEQFEKENSSETNH
EEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKGRDILKNMVSSAGDEAPKASVQSHPQHKPAGAVRAMNLSLGRLGDEAAAAKELRYALA
CCHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHEEHHHHHHHCCHHHHHHHHHHHHHH
AGDKVVELSPGQIEASFIQDRIPTNNDAALEELIASMRQSGQQVPILVRPHPSKENHYQA
CCCEEEEECCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCHHH
AYGHRRLRAAIALERPIRAIVRQLSDEELIVAQGQENGPRIDLSFIERALFAKRLLQHGF
HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEHHHHHHHHHHHHHHHCCC
DRDRISQALSVDKPETSRLLQVADAIPTDIILAIGPASKIGRPRWLAFAELLKDKAAADR
CHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEECCHHHCCCHHHHHHHHHHHHHHHHHH
IADTVAEAQFGAIDTNERFARLWAQAQGPKASKKDTGGKIRTRKGIVLASMERTAKGAKI
HHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCEEEEEHHHHCCCCEE
TVTSEEFAQFLDARMSDLVEQFEKENSSETNH
EEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA