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The map label for this gene is repA [H]

Identifier: 222109118

GI number: 222109118

Start: 279

End: 1496

Strand: Direct

Name: repA [H]

Synonym: Avi_9501

Alternate gene names: 222109118

Gene position: 279-1496 (Clockwise)

Preceding gene: NA

Following gene: 222109119

Centisome position: 0.21

GC content: 53.94

Gene sequence:

>1218_bases
ATGGCGATTAAGACCGCAAATAGCACTGCAGCCGGAAAAATCGAACGCGTTTCGATCGACAAGACCATTGCTGACGATGC
CGCAAAACTCAGCAGCAACCTTCAGGAACTATCTGCTCGTCTGTTTTCGCCTGACGCACAAAAGGCGCTGCGTCGCTTCA
GCAGCACGGAGGCTGCCAAGTTGCTCGGTGTAACAGATAGCTACGTGCGTCATTTAGCTGCTCAAGAGGATTCGGTCACT
TCCGAAAAAACATCCGCTGGTCGGCGGACCTTCTCCTTGAGCGAGATCAACACGATCCGCCAGCTCCTTGGGAAGACAAA
GCCTGCCTACCTCGCAGGACGCCGGGAAGCCGATCATCTTCAGGTTATCGCGGTGACCAACTTCAAGGGTGGATCAGGTA
AGACGACGACATCCACGCACCTCGCTCAATATCTGGCGCTGCGCGGTTATCGTGTTCTCGCCGTTGATCTGGATCCGCAG
GCATCAATGTCTGCAATGTTGGGATATCAGCCAGAATTCGACGTCGGTGAAAACGAGACGCTGTTCGGCGCTATTCGCTA
CGATGACCTTCGTCGCCCTGTTGGAGAGGTGGTTCGTGAGACCTATTTCCCAGGCTTGGATCTAATTCCCGGTAATCTTG
AGCTTCACGAATTCGAGCACGATACGCCAAGAGCTCTGGCAGAGCGAAATGGCTCTGAAACCGACATGTTCTTCATGCGT
GTCGGTAATGCGCTTGCTGATCTCTCTGAACGATATGACGTCGTCGTTATCGACTGCCCGCCGACGTTGGGTTTCCTCAC
GCTCTCGGCCCTATGTGCTGCAACGGCAGTACTAATTACAGTGCACCCCCAAATGCTCGACGTTGCATCCATGAATCAGT
TTCTGGCGATGACGTCGGATCTTCTGTCGGTGGTCAAAGAAGCTGGCGGGAATCTCGAGTACGACTGGATGCGATATCTG
GTCACGCGGTACGAGCCGAACGATGGTCCACAAGCGCAGATTGTTGCATTCCTCCGAAGCCTGTTCGGTGACCGTGTCCT
CACCTCGATGATGGTGAAGTCTACGGCAATCTCTGATGCCGGCCTTTCAAAACAGACAATCTATGAGGCTGCACGAGAAA
CTATGAACAGGCAAACCTACGATCGCGCCGTGGAGGCCATGGATGGGGTCAACCTTGAAGTCGAAGCTCTTCTCAAAAGC
TCATGGGGGCGGGCATGA

Upstream 100 bases:

>100_bases
GCCAAAATGGTTAAATTGCGTTAACCAAAAACAACTTGACGTAAAGGTGCGCTATGGGATCATTTGCGGCGATTACAGAA
AATTATCGGATTTACCGTGA

Downstream 100 bases:

>100_bases
AGGGCCGTGACATTCTCAAGAATATGGTCAGCTCTGCTGGGGATGAAGCACCGAAGGCGAGCGTTCAGTCCCATCCACAG
CACAAGCCTGCGGGCGCCGT

Product: replication protein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 404

Protein sequence:

>405_residues
MAIKTANSTAAGKIERVSIDKTIADDAAKLSSNLQELSARLFSPDAQKALRRFSSTEAAKLLGVTDSYVRHLAAQEDSVT
SEKTSAGRRTFSLSEINTIRQLLGKTKPAYLAGRREADHLQVIAVTNFKGGSGKTTTSTHLAQYLALRGYRVLAVDLDPQ
ASMSAMLGYQPEFDVGENETLFGAIRYDDLRRPVGEVVRETYFPGLDLIPGNLELHEFEHDTPRALAERNGSETDMFFMR
VGNALADLSERYDVVVIDCPPTLGFLTLSALCAATAVLITVHPQMLDVASMNQFLAMTSDLLSVVKEAGGNLEYDWMRYL
VTRYEPNDGPQAQIVAFLRSLFGDRVLTSMMVKSTAISDAGLSKQTIYEAARETMNRQTYDRAVEAMDGVNLEVEALLKS
SWGRA

Sequences:

>Translated_405_residues
MAIKTANSTAAGKIERVSIDKTIADDAAKLSSNLQELSARLFSPDAQKALRRFSSTEAAKLLGVTDSYVRHLAAQEDSVT
SEKTSAGRRTFSLSEINTIRQLLGKTKPAYLAGRREADHLQVIAVTNFKGGSGKTTTSTHLAQYLALRGYRVLAVDLDPQ
ASMSAMLGYQPEFDVGENETLFGAIRYDDLRRPVGEVVRETYFPGLDLIPGNLELHEFEHDTPRALAERNGSETDMFFMR
VGNALADLSERYDVVVIDCPPTLGFLTLSALCAATAVLITVHPQMLDVASMNQFLAMTSDLLSVVKEAGGNLEYDWMRYL
VTRYEPNDGPQAQIVAFLRSLFGDRVLTSMMVKSTAISDAGLSKQTIYEAARETMNRQTYDRAVEAMDGVNLEVEALLKS
SWGRA
>Mature_404_residues
AIKTANSTAAGKIERVSIDKTIADDAAKLSSNLQELSARLFSPDAQKALRRFSSTEAAKLLGVTDSYVRHLAAQEDSVTS
EKTSAGRRTFSLSEINTIRQLLGKTKPAYLAGRREADHLQVIAVTNFKGGSGKTTTSTHLAQYLALRGYRVLAVDLDPQA
SMSAMLGYQPEFDVGENETLFGAIRYDDLRRPVGEVVRETYFPGLDLIPGNLELHEFEHDTPRALAERNGSETDMFFMRV
GNALADLSERYDVVVIDCPPTLGFLTLSALCAATAVLITVHPQMLDVASMNQFLAMTSDLLSVVKEAGGNLEYDWMRYLV
TRYEPNDGPQAQIVAFLRSLFGDRVLTSMMVKSTAISDAGLSKQTIYEAARETMNRQTYDRAVEAMDGVNLEVEALLKSS
WGRA

Specific function: This protein is coded by a hairy root Ri plasmid. It is possibly involved in regulating the plasmid copy-number [H]

COG id: COG1192

COG function: function code D; ATPases involved in chromosome partitioning

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002586
- InterPro:   IPR017818 [H]

Pfam domain/function: PF01656 CbiA [H]

EC number: NA

Molecular weight: Translated: 44486; Mature: 44355

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIKTANSTAAGKIERVSIDKTIADDAAKLSSNLQELSARLFSPDAQKALRRFSSTEAAK
CCEECCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHH
LLGVTDSYVRHLAAQEDSVTSEKTSAGRRTFSLSEINTIRQLLGKTKPAYLAGRREADHL
HHCCCHHHHHHHHHCCCCCCHHHHHCCCCEEEHHHHHHHHHHHCCCCCCHHCCCCCCCCE
QVIAVTNFKGGSGKTTTSTHLAQYLALRGYRVLAVDLDPQASMSAMLGYQPEFDVGENET
EEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCCCCCCCCCCCE
LFGAIRYDDLRRPVGEVVRETYFPGLDLIPGNLELHEFEHDTPRALAERNGSETDMFFMR
EEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCHHHHHHCCCCCHHHHHHH
VGNALADLSERYDVVVIDCPPTLGFLTLSALCAATAVLITVHPQMLDVASMNQFLAMTSD
HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHEEECHHHHHHHHHHHHHHHHHH
LLSVVKEAGGNLEYDWMRYLVTRYEPNDGPQAQIVAFLRSLFGDRVLTSMMVKSTAISDA
HHHHHHHCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
GLSKQTIYEAARETMNRQTYDRAVEAMDGVNLEVEALLKSSWGRA
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCC
>Mature Secondary Structure 
AIKTANSTAAGKIERVSIDKTIADDAAKLSSNLQELSARLFSPDAQKALRRFSSTEAAK
CEECCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHH
LLGVTDSYVRHLAAQEDSVTSEKTSAGRRTFSLSEINTIRQLLGKTKPAYLAGRREADHL
HHCCCHHHHHHHHHCCCCCCHHHHHCCCCEEEHHHHHHHHHHHCCCCCCHHCCCCCCCCE
QVIAVTNFKGGSGKTTTSTHLAQYLALRGYRVLAVDLDPQASMSAMLGYQPEFDVGENET
EEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCCCCCCCCCCCE
LFGAIRYDDLRRPVGEVVRETYFPGLDLIPGNLELHEFEHDTPRALAERNGSETDMFFMR
EEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCHHHHHHCCCCCHHHHHHH
VGNALADLSERYDVVVIDCPPTLGFLTLSALCAATAVLITVHPQMLDVASMNQFLAMTSD
HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHEEECHHHHHHHHHHHHHHHHHH
LLSVVKEAGGNLEYDWMRYLVTRYEPNDGPQAQIVAFLRSLFGDRVLTSMMVKSTAISDA
HHHHHHHCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
GLSKQTIYEAARETMNRQTYDRAVEAMDGVNLEVEALLKSSWGRA
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA