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The map label for this gene is cpcT [H]

Identifier: 158340571

GI number: 158340571

Start: 104760

End: 105353

Strand: Direct

Name: cpcT [H]

Synonym: AM1_C0119

Alternate gene names: 158340571

Gene position: 104760-105353 (Clockwise)

Preceding gene: 158340570

Following gene: 158340572

Centisome position: 38.36

GC content: 35.52

Gene sequence:

>594_bases
ATGACCCACTCTACTGATTCATATACATTAGCAAAATGGCTCGCTGCAGAATTCAGTAATCAAGCTCAAGCCATAGAAAA
TCCACCACTGTATGCTCATATACAAGTTAGTATAAGACCTTTGCCCAGAAAGCTATTGACTGGGTATTGTTTATATCTTG
AACAAGCATATGCCTTTATGTTAAAAAAACCTTATCGTACGAGGGTAATACATATACTTGAACATAAGGATTCTATCTTA
ATTGAAAATTATGAACTTCATAAAAAAGAGCTTTTTCTTGGTGGAACTAGAGACCCTTTGATATTGAATAAAATCTCTAC
TGAGCATTTAATTAAGAAAGAAGGTTGTGACATGAACGTAGAGTGGACTGGTCATAGCTTTGTTGGAACAGTAGTCCCAG
GGAAATCCTGTAAAGTTGTACGGAATGGGAAAACAACTTATTTAGATAATTCCTTTGAAGTTGATCAAAATAAATTTATT
AGTATTGATCGGGGGAGAGATCCGGAAACCGATGAGCTTATTTGGGGATCAATTGCAGGCCCTTTTCATTTTTCTCGCAT
CAAGAGTTTTGAAAATGAATTGATCGCTACTTGA

Upstream 100 bases:

>100_bases
GGTTTTTTGAACTTAAATTGAATCACCATAAAATAATTAATCAAGATTTGCATTGATCTATATAATCAATTTTTAATCAC
ATACAAAATAAACTTTGAAA

Downstream 100 bases:

>100_bases
ACTATTTTTAACTTAAAGTGAGTTTTTTTTGGAATTTAAGTACTCATTAGTAAATACTTATGTATATAAAAAAATTTGAA
AAATGGTTTATCTAGAGTTT

Product: CpcT protein, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 196

Protein sequence:

>197_residues
MTHSTDSYTLAKWLAAEFSNQAQAIENPPLYAHIQVSIRPLPRKLLTGYCLYLEQAYAFMLKKPYRTRVIHILEHKDSIL
IENYELHKKELFLGGTRDPLILNKISTEHLIKKEGCDMNVEWTGHSFVGTVVPGKSCKVVRNGKTTYLDNSFEVDQNKFI
SIDRGRDPETDELIWGSIAGPFHFSRIKSFENELIAT

Sequences:

>Translated_197_residues
MTHSTDSYTLAKWLAAEFSNQAQAIENPPLYAHIQVSIRPLPRKLLTGYCLYLEQAYAFMLKKPYRTRVIHILEHKDSIL
IENYELHKKELFLGGTRDPLILNKISTEHLIKKEGCDMNVEWTGHSFVGTVVPGKSCKVVRNGKTTYLDNSFEVDQNKFI
SIDRGRDPETDELIWGSIAGPFHFSRIKSFENELIAT
>Mature_196_residues
THSTDSYTLAKWLAAEFSNQAQAIENPPLYAHIQVSIRPLPRKLLTGYCLYLEQAYAFMLKKPYRTRVIHILEHKDSILI
ENYELHKKELFLGGTRDPLILNKISTEHLIKKEGCDMNVEWTGHSFVGTVVPGKSCKVVRNGKTTYLDNSFEVDQNKFIS
IDRGRDPETDELIWGSIAGPFHFSRIKSFENELIAT

Specific function: Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CpcT/CpeT biliprotein lyase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010404 [H]

Pfam domain/function: PF06206 DUF1001 [H]

EC number: NA

Molecular weight: Translated: 22600; Mature: 22469

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHSTDSYTLAKWLAAEFSNQAQAIENPPLYAHIQVSIRPLPRKLLTGYCLYLEQAYAFM
CCCCCCCHHHHHHHHHHHCCCHHHCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHH
LKKPYRTRVIHILEHKDSILIENYELHKKELFLGGTRDPLILNKISTEHLIKKEGCDMNV
HCCCCHHEEEEEEECCCCEEEECCCCCCEEEEECCCCCCEEEECCCHHHHHHHCCCCEEE
EWTGHSFVGTVVPGKSCKVVRNGKTTYLDNSFEVDQNKFISIDRGRDPETDELIWGSIAG
EECCCEEEEEECCCCCEEEEECCCEEEECCCEECCCCEEEEEECCCCCCCCCEEEECCCC
PFHFSRIKSFENELIAT
CHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
THSTDSYTLAKWLAAEFSNQAQAIENPPLYAHIQVSIRPLPRKLLTGYCLYLEQAYAFM
CCCCCCHHHHHHHHHHHCCCHHHCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHH
LKKPYRTRVIHILEHKDSILIENYELHKKELFLGGTRDPLILNKISTEHLIKKEGCDMNV
HCCCCHHEEEEEEECCCCEEEECCCCCCEEEEECCCCCCEEEECCCHHHHHHHCCCCEEE
EWTGHSFVGTVVPGKSCKVVRNGKTTYLDNSFEVDQNKFISIDRGRDPETDELIWGSIAG
EECCCEEEEEECCCCCEEEEECCCEEEECCCEECCCCEEEEEECCCCCCCCCEEEECCCC
PFHFSRIKSFENELIAT
CHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12240834 [H]