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The map label for this gene is cpcG [H]

Identifier: 158340555

GI number: 158340555

Start: 92763

End: 93581

Strand: Reverse

Name: cpcG [H]

Synonym: AM1_C0102

Alternate gene names: 158340555

Gene position: 93581-92763 (Counterclockwise)

Preceding gene: 158340559

Following gene: 158340554

Centisome position: 34.26

GC content: 48.84

Gene sequence:

>819_bases
ATGTCTCTGCCTTTATTGGAGTACACCCCTATGTCTCAAAATCAGCGTGTAGCTGGTTTTGAAGTACCGGGTGATGAACA
GCCAAGGATCTTTACGACTGAGAATCTCCCTTCCCCTAACGAAATTGCGACCATCATTGATGCCGCCTACCTGCAAATCT
TCCATGAGCAACAGATGCTAGTGGCTAACCGTCAGGCGACCCTGGAATCCCAACTCAAAGCCAGGCAGATTACCGTCAAG
GATTTTATCCGGGGTTTGATCTTATCTGATTCCTTCCGGCGGCTGAATTATGATGCCAACAACAACTATCGTTTTATTGA
GCTTTGCTTCCAGCGGGTGTTAGGCCGCCAAGTTTATAACGAAAGAGAAACTCTCGCTTGGTCGATTGTGCTAGCTACGA
AAGGGCTTCAAGGCTTTATCGATGAGCTGCTTAATACCGATGAGTATTTGGAAACTTTTGGGGAAGATACAGTTCCGTAT
CAACGCCGTCGAATTCTCCCTCAGCAGGAGATCGGTGAGTTAACCTTTGCTCACGTCACTCGTTTTGGTGAGGAATTTCG
GGATAGTATTGCCAGAACTAGTCGGTCTTCGGGCGTTGCTCGTCGTTCAAGCCCGCCGAGTCGCTCCAGTGCACCAAGCC
GCTCTAGTGCACCCAGTCGTTCCAACACTAGTCGCCCCAGTACACCCAGTCGAGTAACTAGCTCAGCTAGCTCTTCTTCA
GAGGAATCCGGTAGCTATACTGGCCTTATAGCGGCAATTCTAATTGGTTTTGGCGCACTGAGTGGTGTGATAATTGCTTC
CTTTGTGATTGGGTCTTAG

Upstream 100 bases:

>100_bases
CAATATTCAAATATCGAGCGGCCTTCTACTATTGCCATTTGATTGGAATTTATCAATTTACACAGTACTTTGGCCATTTT
TTAGTCAAGGAGTTTTACAT

Downstream 100 bases:

>100_bases
TCTTGAGTTGACTAATGATCTGCAAACACAATTCAGGCTAGAGACAAAGAGAAGTAAAGTAGGGTTGTCTCAATGACAAC
CCTCACCATGGATATGATTC

Product: phycobilisome rod-core linker polypeptide; CpcG

Products: NA

Alternate protein names: L-RC 28.5 [H]

Number of amino acids: Translated: 272; Mature: 271

Protein sequence:

>272_residues
MSLPLLEYTPMSQNQRVAGFEVPGDEQPRIFTTENLPSPNEIATIIDAAYLQIFHEQQMLVANRQATLESQLKARQITVK
DFIRGLILSDSFRRLNYDANNNYRFIELCFQRVLGRQVYNERETLAWSIVLATKGLQGFIDELLNTDEYLETFGEDTVPY
QRRRILPQQEIGELTFAHVTRFGEEFRDSIARTSRSSGVARRSSPPSRSSAPSRSSAPSRSNTSRPSTPSRVTSSASSSS
EESGSYTGLIAAILIGFGALSGVIIASFVIGS

Sequences:

>Translated_272_residues
MSLPLLEYTPMSQNQRVAGFEVPGDEQPRIFTTENLPSPNEIATIIDAAYLQIFHEQQMLVANRQATLESQLKARQITVK
DFIRGLILSDSFRRLNYDANNNYRFIELCFQRVLGRQVYNERETLAWSIVLATKGLQGFIDELLNTDEYLETFGEDTVPY
QRRRILPQQEIGELTFAHVTRFGEEFRDSIARTSRSSGVARRSSPPSRSSAPSRSSAPSRSNTSRPSTPSRVTSSASSSS
EESGSYTGLIAAILIGFGALSGVIIASFVIGS
>Mature_271_residues
SLPLLEYTPMSQNQRVAGFEVPGDEQPRIFTTENLPSPNEIATIIDAAYLQIFHEQQMLVANRQATLESQLKARQITVKD
FIRGLILSDSFRRLNYDANNNYRFIELCFQRVLGRQVYNERETLAWSIVLATKGLQGFIDELLNTDEYLETFGEDTVPYQ
RRRILPQQEIGELTFAHVTRFGEEFRDSIARTSRSSGVARRSSPPSRSSAPSRSSAPSRSNTSRPSTPSRVTSSASSSSE
ESGSYTGLIAAILIGFGALSGVIIASFVIGS

Specific function: Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PBS-linker domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001297
- InterPro:   IPR016470
- ProDom:   PD000852 [H]

Pfam domain/function: PF00427 PBS_linker_poly [H]

EC number: NA

Molecular weight: Translated: 30255; Mature: 30124

Theoretical pI: Translated: 6.56; Mature: 6.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLPLLEYTPMSQNQRVAGFEVPGDEQPRIFTTENLPSPNEIATIIDAAYLQIFHEQQML
CCCCCCCCCCCCCCCCEEECCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH
VANRQATLESQLKARQITVKDFIRGLILSDSFRRLNYDANNNYRFIELCFQRVLGRQVYN
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHC
ERETLAWSIVLATKGLQGFIDELLNTDEYLETFGEDTVPYQRRRILPQQEIGELTFAHVT
CHHHHEEEHHHHHCCHHHHHHHHHCCHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHH
RFGEEFRDSIARTSRSSGVARRSSPPSRSSAPSRSSAPSRSNTSRPSTPSRVTSSASSSS
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCC
EESGSYTGLIAAILIGFGALSGVIIASFVIGS
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SLPLLEYTPMSQNQRVAGFEVPGDEQPRIFTTENLPSPNEIATIIDAAYLQIFHEQQML
CCCCCCCCCCCCCCCEEECCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH
VANRQATLESQLKARQITVKDFIRGLILSDSFRRLNYDANNNYRFIELCFQRVLGRQVYN
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHC
ERETLAWSIVLATKGLQGFIDELLNTDEYLETFGEDTVPYQRRRILPQQEIGELTFAHVT
CHHHHEEEHHHHHCCHHHHHHHHHCCHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHH
RFGEEFRDSIARTSRSSGVARRSSPPSRSSAPSRSSAPSRSNTSRPSTPSRVTSSASSSS
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCC
EESGSYTGLIAAILIGFGALSGVIIASFVIGS
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2164365 [H]