Click here to switch to the map view.

The map label for this gene is cpcB [H]

Identifier: 158340553

GI number: 158340553

Start: 90873

End: 91391

Strand: Reverse

Name: cpcB [H]

Synonym: AM1_C0100

Alternate gene names: 158340553

Gene position: 91391-90873 (Counterclockwise)

Preceding gene: 158340554

Following gene: 158340552

Centisome position: 33.46

GC content: 51.06

Gene sequence:

>519_bases
ATGTATGATGCATTTGCGAAAGTAGTTTCACAAGCAGACGCCCGAGGGGATTTTCTGAGTGATTCCCAGATCGCAGCCCT
GCAAGCTGTCGTCTCGGATGGCAATAAGCGGATGGATGTCGTCAATCGAATCACGAGTAATGCGTCTACCATCGTTGCGA
ATGCGGCGCGTGATTTGTTCGAGGAGCAGCCTTCACTCATCCAGCCGGGTGGTAATGCATACACCCATCGTCGGATGGCC
GCTTGCTTACGAGACATGGAAATTATTCTGCGTTATGTGACTTACGCCATCTTTGCCGGTGATGCCAGCATTCTTGAAGA
TCGCTGTTTGAACGGCCTCAAGCAAACCTATCAAACACTGGGTGTCCCAACCAAGTCGATGTCCCTGAGCGTCAGCAAGA
TGCGAGATGCAGCATTAGAAATTGCGAGTGACCCTAATGGCGTCACTCAAGGAGATTGTTCCAGCTTGATTTCAGAAGTC
AGCGACTACTTCGACTTAGCGGCACGCGCCGTAGGCTAA

Upstream 100 bases:

>100_bases
GTTTAAGGTCAAGATTATTGAAATTCTTAGCTTATTTCAGTACTAAGACACACATGAAATAAAGCGCATTTATGACATTT
ATGGAGATTCCAATAGAACT

Downstream 100 bases:

>100_bases
CGGGCCTCGTTAGAAATAGCCATCCATCGCGCCCCATTTAGATATCGGTAATTAGGAGAAATTTAGAAATGAAAACCCCT
TTGACTGAGGCCCTAGCTTC

Product: phycocyanin, beta subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MYDAFAKVVSQADARGDFLSDSQIAALQAVVSDGNKRMDVVNRITSNASTIVANAARDLFEEQPSLIQPGGNAYTHRRMA
ACLRDMEIILRYVTYAIFAGDASILEDRCLNGLKQTYQTLGVPTKSMSLSVSKMRDAALEIASDPNGVTQGDCSSLISEV
SDYFDLAARAVG

Sequences:

>Translated_172_residues
MYDAFAKVVSQADARGDFLSDSQIAALQAVVSDGNKRMDVVNRITSNASTIVANAARDLFEEQPSLIQPGGNAYTHRRMA
ACLRDMEIILRYVTYAIFAGDASILEDRCLNGLKQTYQTLGVPTKSMSLSVSKMRDAALEIASDPNGVTQGDCSSLISEV
SDYFDLAARAVG
>Mature_172_residues
MYDAFAKVVSQADARGDFLSDSQIAALQAVVSDGNKRMDVVNRITSNASTIVANAARDLFEEQPSLIQPGGNAYTHRRMA
ACLRDMEIILRYVTYAIFAGDASILEDRCLNGLKQTYQTLGVPTKSMSLSVSKMRDAALEIASDPNGVTQGDCSSLISEV
SDYFDLAARAVG

Specific function: Light-harvesting photosynthetic bile pigment-protein from the phycobiliprotein complex [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=Part of the phycobilisome rod [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phycobiliprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009050
- InterPro:   IPR012128
- InterPro:   IPR006247 [H]

Pfam domain/function: PF00502 Phycobilisome [H]

EC number: NA

Molecular weight: Translated: 18538; Mature: 18538

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYDAFAKVVSQADARGDFLSDSQIAALQAVVSDGNKRMDVVNRITSNASTIVANAARDLF
CHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHH
EEQPSLIQPGGNAYTHRRMAACLRDMEIILRYVTYAIFAGDASILEDRCLNGLKQTYQTL
HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
GVPTKSMSLSVSKMRDAALEIASDPNGVTQGDCSSLISEVSDYFDLAARAVG
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MYDAFAKVVSQADARGDFLSDSQIAALQAVVSDGNKRMDVVNRITSNASTIVANAARDLF
CHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHH
EEQPSLIQPGGNAYTHRRMAACLRDMEIILRYVTYAIFAGDASILEDRCLNGLKQTYQTL
HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
GVPTKSMSLSVSKMRDAALEIASDPNGVTQGDCSSLISEVSDYFDLAARAVG
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3127591; 3086870; 1899708 [H]