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The map label for this gene is cpcC [H]

Identifier: 158340547

GI number: 158340547

Start: 87205

End: 88077

Strand: Reverse

Name: cpcC [H]

Synonym: AM1_C0094

Alternate gene names: 158340547

Gene position: 88077-87205 (Counterclockwise)

Preceding gene: 158340549

Following gene: 158340546

Centisome position: 32.25

GC content: 46.16

Gene sequence:

>873_bases
GTGGCAATAACGACATCAGCATCTCGACTGGGTACATCAGTATTCGATGAAACGCCACCTACGGAGCTTCGTCCCAACTG
GTCACAGAAAGATGCTGAGATGACCATTAATGCGGTTTACCGCCAGGTGTTAGGAAACGACCATTTAATGGAAGCGGAGC
GACTCAGCGGGCTTGAGTCTCAATTTGCCAACGGTCTTTTAACGGTTAAAGATTTTGTTCGTGCAGTTGCTAAATCAGAA
TTATATAAGTCCAAATTTCTCTACCCTCATTTTCATACGAGAGTCATTGAATTAAACTTCAAGCACCTCTTAGGGCGAGC
ACCCTATAGTGAAGCAGAGGTGATTGAACATCTCGATCGTTACCAAAATGAGGGATATGAGGCAGATATTGATTCTTATA
TTGACTCCAAGGAATATGATGCGAGTTTTGGTGATTCCATCGTTCCTTACTACCGCGATTTGGTGACCACAGGTGTCGGT
CAGCAAACGGTTGGATTTACCCGCCTGTTCAATCTATACCGTGGATATGCCAATAGCGACCGCGCTCAATTAGCGGGTGC
AGCGTCTCGCTTGGCTGGCCAACTTGCTACTAATTCCGCTTCTGCAGTAATCGCACCCTCTGGCGGGTGCGACGGCTGGG
GATATCAGTCTTCTAAACAAGGAACGACCCCAAATCTAGCGTTTGGACGCTCGTCTGAATCTTCTACTGCCCGTCTATAT
CGGATTGAGGTTTCTGGCATTAGTCTACCTCGATATCCGAAGGTGAGAAGGAGCAATCGGGAATTTATTGTTCCTTACAA
TCAACTCAATAACACCCTGAAACAGATCAATAAGTTGGGTGGTAAGGTTGCAAGCATTACTGTTGCGAAATAG

Upstream 100 bases:

>100_bases
TCTAAAAGAACCAGGTGATTGATACTTATTACTATCACTTAATTGAATTTCCAGCGACCAAAAACATAAGCGATACACGA
GTGTCAAAGGAGAGTTACTT

Downstream 100 bases:

>100_bases
GAGTTAGAAACATAATGTTAGGGCAATCTCGCCAAACTTTCATATATGAAGTAACCGGTTTACGACAAAACAGTGAAACC
CAGAATCGAAATCATCAATT

Product: phycobilisome 32.1 kDa linker polypeptide

Products: NA

Alternate protein names: L-39/R [H]

Number of amino acids: Translated: 290; Mature: 289

Protein sequence:

>290_residues
MAITTSASRLGTSVFDETPPTELRPNWSQKDAEMTINAVYRQVLGNDHLMEAERLSGLESQFANGLLTVKDFVRAVAKSE
LYKSKFLYPHFHTRVIELNFKHLLGRAPYSEAEVIEHLDRYQNEGYEADIDSYIDSKEYDASFGDSIVPYYRDLVTTGVG
QQTVGFTRLFNLYRGYANSDRAQLAGAASRLAGQLATNSASAVIAPSGGCDGWGYQSSKQGTTPNLAFGRSSESSTARLY
RIEVSGISLPRYPKVRRSNREFIVPYNQLNNTLKQINKLGGKVASITVAK

Sequences:

>Translated_290_residues
MAITTSASRLGTSVFDETPPTELRPNWSQKDAEMTINAVYRQVLGNDHLMEAERLSGLESQFANGLLTVKDFVRAVAKSE
LYKSKFLYPHFHTRVIELNFKHLLGRAPYSEAEVIEHLDRYQNEGYEADIDSYIDSKEYDASFGDSIVPYYRDLVTTGVG
QQTVGFTRLFNLYRGYANSDRAQLAGAASRLAGQLATNSASAVIAPSGGCDGWGYQSSKQGTTPNLAFGRSSESSTARLY
RIEVSGISLPRYPKVRRSNREFIVPYNQLNNTLKQINKLGGKVASITVAK
>Mature_289_residues
AITTSASRLGTSVFDETPPTELRPNWSQKDAEMTINAVYRQVLGNDHLMEAERLSGLESQFANGLLTVKDFVRAVAKSEL
YKSKFLYPHFHTRVIELNFKHLLGRAPYSEAEVIEHLDRYQNEGYEADIDSYIDSKEYDASFGDSIVPYYRDLVTTGVGQ
QTVGFTRLFNLYRGYANSDRAQLAGAASRLAGQLATNSASAVIAPSGGCDGWGYQSSKQGTTPNLAFGRSSESSTARLYR
IEVSGISLPRYPKVRRSNREFIVPYNQLNNTLKQINKLGGKVASITVAK

Specific function: Rod linker protein, associated with phycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a d

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=Associated with phycocyanin [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PBS-linker domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001297
- InterPro:   IPR016470
- InterPro:   IPR008213
- ProDom:   PD000852 [H]

Pfam domain/function: PF01383 CpcD; PF00427 PBS_linker_poly [H]

EC number: NA

Molecular weight: Translated: 32160; Mature: 32029

Theoretical pI: Translated: 9.04; Mature: 9.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAITTSASRLGTSVFDETPPTELRPNWSQKDAEMTINAVYRQVLGNDHLMEAERLSGLES
CCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
QFANGLLTVKDFVRAVAKSELYKSKFLYPHFHTRVIELNFKHLLGRAPYSEAEVIEHLDR
HHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHEEEEEEEHHHHHCCCCCCHHHHHHHHHH
YQNEGYEADIDSYIDSKEYDASFGDSIVPYYRDLVTTGVGQQTVGFTRLFNLYRGYANSD
HHCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC
RAQLAGAASRLAGQLATNSASAVIAPSGGCDGWGYQSSKQGTTPNLAFGRSSESSTARLY
HHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEE
RIEVSGISLPRYPKVRRSNREFIVPYNQLNNTLKQINKLGGKVASITVAK
EEEECCCCCCCCCHHHCCCCCEEECHHHHHHHHHHHHHHCCCEEEEEECC
>Mature Secondary Structure 
AITTSASRLGTSVFDETPPTELRPNWSQKDAEMTINAVYRQVLGNDHLMEAERLSGLES
CCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
QFANGLLTVKDFVRAVAKSELYKSKFLYPHFHTRVIELNFKHLLGRAPYSEAEVIEHLDR
HHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHEEEEEEEHHHHHCCCCCCHHHHHHHHHH
YQNEGYEADIDSYIDSKEYDASFGDSIVPYYRDLVTTGVGQQTVGFTRLFNLYRGYANSD
HHCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC
RAQLAGAASRLAGQLATNSASAVIAPSGGCDGWGYQSSKQGTTPNLAFGRSSESSTARLY
HHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEE
RIEVSGISLPRYPKVRRSNREFIVPYNQLNNTLKQINKLGGKVASITVAK
EEEECCCCCCCCCHHHCCCCCEEECHHHHHHHHHHHHHHCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3108238 [H]