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The map label for this gene is cpcG [H]

Identifier: 158340545

GI number: 158340545

Start: 85815

End: 86519

Strand: Direct

Name: cpcG [H]

Synonym: AM1_C0092

Alternate gene names: 158340545

Gene position: 85815-86519 (Clockwise)

Preceding gene: 158340542

Following gene: 158340548

Centisome position: 31.42

GC content: 44.68

Gene sequence:

>705_bases
ATGCCCTTGCCTTTATTAGAGTACAACTTGACATCTCAAAATCAGCGTGTTGATGGTTTTGAAGTCCCAAGCGATGAACA
AAAAACATTCAGTTCAGGGAAACTTACTACCCCTACTGAAATTGCGACCATCATTGATGCTGCCTACTTGCAAATCTTCC
ATGAGCAACAGATGCTAACGGCTAACCGTCAGGCGACCCTGGAATCCCAACTCAAAGCCGGGCAGATTACCGTCAAGGAT
TTTATCCGGGGTTTGATTTTATCAGATTCCTTTCGACGGCTGAATTATGATGCCAACAACAACTATCGCTTTGTTGAGCT
TTGCTTCCAGCGGGTGTTAGGCCGCCAGGTTTATAACGAAAGAGAAACCCTGGCTTGGTCAATTGTTCTAGCTACGAAAG
GGCTTCAAGGCTTTATCGATGAACTGCTCAATACCGATGAATATTTGGAAACTTTTGGGGAAGATACAGTTCCGTATCAA
CGCCGTCGAATTCTCCCTAAGCAGGAGATCGGTGAGTTAACCTTTGCTCACGTCACTCGTTATGGTGAAGATTATCGGAA
TAAACTTGCCCGTTACAGCCGCTCTTCTGAATTTCGAACCTTGGATGTCCGCTCTGAGAAGGTTTCCCTATTTTTGACAA
CATTGGTTATCGTCGTGCTACTAGGCATTTTATTAACGCTCCTGAATGCAGCCCCTATTAGTTAG

Upstream 100 bases:

>100_bases
GAACAATCCCTTAAAATGCTTTGATTGGGCTGTATTGGCTATGTTAAGTTTTGGGATTTATATCTAGAATTTTGATTTTA
TCCAGTTGGGAGTTTTTAAT

Downstream 100 bases:

>100_bases
CGTTCGGGATTTATTTATAGGAAGTATTGTAAGTGATTCACTACAATACTTCCTATTCTGGTGTTCAAGGTTAATGTCCA
ATACTGGAAATTCAGAGTTC

Product: phycobilisome rod-core linker polypeptide; CpcG

Products: NA

Alternate protein names: L-RC 28.5 [H]

Number of amino acids: Translated: 234; Mature: 233

Protein sequence:

>234_residues
MPLPLLEYNLTSQNQRVDGFEVPSDEQKTFSSGKLTTPTEIATIIDAAYLQIFHEQQMLTANRQATLESQLKAGQITVKD
FIRGLILSDSFRRLNYDANNNYRFVELCFQRVLGRQVYNERETLAWSIVLATKGLQGFIDELLNTDEYLETFGEDTVPYQ
RRRILPKQEIGELTFAHVTRYGEDYRNKLARYSRSSEFRTLDVRSEKVSLFLTTLVIVVLLGILLTLLNAAPIS

Sequences:

>Translated_234_residues
MPLPLLEYNLTSQNQRVDGFEVPSDEQKTFSSGKLTTPTEIATIIDAAYLQIFHEQQMLTANRQATLESQLKAGQITVKD
FIRGLILSDSFRRLNYDANNNYRFVELCFQRVLGRQVYNERETLAWSIVLATKGLQGFIDELLNTDEYLETFGEDTVPYQ
RRRILPKQEIGELTFAHVTRYGEDYRNKLARYSRSSEFRTLDVRSEKVSLFLTTLVIVVLLGILLTLLNAAPIS
>Mature_233_residues
PLPLLEYNLTSQNQRVDGFEVPSDEQKTFSSGKLTTPTEIATIIDAAYLQIFHEQQMLTANRQATLESQLKAGQITVKDF
IRGLILSDSFRRLNYDANNNYRFVELCFQRVLGRQVYNERETLAWSIVLATKGLQGFIDELLNTDEYLETFGEDTVPYQR
RRILPKQEIGELTFAHVTRYGEDYRNKLARYSRSSEFRTLDVRSEKVSLFLTTLVIVVLLGILLTLLNAAPIS

Specific function: Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PBS-linker domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001297
- InterPro:   IPR016470
- ProDom:   PD000852 [H]

Pfam domain/function: PF00427 PBS_linker_poly [H]

EC number: NA

Molecular weight: Translated: 26897; Mature: 26766

Theoretical pI: Translated: 5.42; Mature: 5.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLPLLEYNLTSQNQRVDGFEVPSDEQKTFSSGKLTTPTEIATIIDAAYLQIFHEQQMLT
CCCCCEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
ANRQATLESQLKAGQITVKDFIRGLILSDSFRRLNYDANNNYRFVELCFQRVLGRQVYNE
HHHHHHHHHHHHCCCEEHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCC
RETLAWSIVLATKGLQGFIDELLNTDEYLETFGEDTVPYQRRRILPKQEIGELTFAHVTR
HHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHHH
YGEDYRNKLARYSRSSEFRTLDVRSEKVSLFLTTLVIVVLLGILLTLLNAAPIS
HHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
PLPLLEYNLTSQNQRVDGFEVPSDEQKTFSSGKLTTPTEIATIIDAAYLQIFHEQQMLT
CCCCEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
ANRQATLESQLKAGQITVKDFIRGLILSDSFRRLNYDANNNYRFVELCFQRVLGRQVYNE
HHHHHHHHHHHHCCCEEHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCC
RETLAWSIVLATKGLQGFIDELLNTDEYLETFGEDTVPYQRRRILPKQEIGELTFAHVTR
HHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHHH
YGEDYRNKLARYSRSSEFRTLDVRSEKVSLFLTTLVIVVLLGILLTLLNAAPIS
HHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2164365 [H]