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The map label for this gene is rbpF [H]

Identifier: 158340503

GI number: 158340503

Start: 53557

End: 53802

Strand: Reverse

Name: rbpF [H]

Synonym: AM1_C0048

Alternate gene names: 158340503

Gene position: 53802-53557 (Counterclockwise)

Preceding gene: 158340504

Following gene: 158340501

Centisome position: 19.7

GC content: 49.19

Gene sequence:

>246_bases
ATGCGCCCGCTGGTCCAACAAGACCTAAACGCCGTTTTTGCTGAATATGGAACTGTCAAACAGGTCAAGATGCCTACTGA
TCGAGAAACAGGACGCAAGCGTGGATTCGCCTTTGTCGAAATGGGTAATGATGCCGAAGAAGCTAAAGCTATCGATGAGC
TAGAGGGTGCTGAATTGATGGGACGCACTCTGAAAGTGAATAAAGCCAGACCCCATGAGAACAGAGGTGGTGGTAATCGC
TGGTAG

Upstream 100 bases:

>100_bases
AATGTCAAAAAATCGATGACTTTCTTAGCGGATTCCAATATCACAATCTGGAGGTTATGCAGGAAAAGGGTTTCAGGCGA
AAGCGCTACTTTCTGTTCAA

Downstream 100 bases:

>100_bases
AGCTAATTTGAATAATAGAATCTGATCTCATAGCTCAATGGTTTTTCAGAGCTATGAGGCTTCCTGAACAATTTTCCCTT
CCTCACCCTCAACAACCTCC

Product: RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 81; Mature: 81

Protein sequence:

>81_residues
MRPLVQQDLNAVFAEYGTVKQVKMPTDRETGRKRGFAFVEMGNDAEEAKAIDELEGAELMGRTLKVNKARPHENRGGGNR
W

Sequences:

>Translated_81_residues
MRPLVQQDLNAVFAEYGTVKQVKMPTDRETGRKRGFAFVEMGNDAEEAKAIDELEGAELMGRTLKVNKARPHENRGGGNR
W
>Mature_81_residues
MRPLVQQDLNAVFAEYGTVKQVKMPTDRETGRKRGFAFVEMGNDAEEAKAIDELEGAELMGRTLKVNKARPHENRGGGNR
W

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI45439316, Length=72, Percent_Identity=41.6666666666667, Blast_Score=64, Evalue=3e-11,
Organism=Homo sapiens, GI5174637, Length=72, Percent_Identity=41.6666666666667, Blast_Score=64, Evalue=3e-11,
Organism=Homo sapiens, GI303305009, Length=72, Percent_Identity=41.6666666666667, Blast_Score=64, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17508587, Length=69, Percent_Identity=43.4782608695652, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI17647301, Length=63, Percent_Identity=44.4444444444444, Blast_Score=65, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 9118; Mature: 9118

Theoretical pI: Translated: 9.14; Mature: 9.14

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPLVQQDLNAVFAEYGTVKQVKMPTDRETGRKRGFAFVEMGNDAEEAKAIDELEGAELM
CCCHHHHHHHHHHHHCCCCCEEECCCCCCCHHHCCEEEEECCCCHHHHHHHHHHCCHHHH
GRTLKVNKARPHENRGGGNRW
CCEEECCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRPLVQQDLNAVFAEYGTVKQVKMPTDRETGRKRGFAFVEMGNDAEEAKAIDELEGAELM
CCCHHHHHHHHHHHHCCCCCEEECCCCCCCHHHCCEEEEECCCCHHHHHHHHHHCCHHHH
GRTLKVNKARPHENRGGGNRW
CCEEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]