Definition Acaryochloris marina MBIC11017 plasmid pREB3, complete sequence.
Accession NC_009928
Length 273,121

Click here to switch to the map view.

The map label for this gene is 158340497

Identifier: 158340497

GI number: 158340497

Start: 48768

End: 49229

Strand: Reverse

Name: 158340497

Synonym: AM1_C0042

Alternate gene names: NA

Gene position: 49229-48768 (Counterclockwise)

Preceding gene: 158340501

Following gene: 158340496

Centisome position: 18.02

GC content: 38.53

Gene sequence:

>462_bases
ATGAGCTATTCAAAAGTTGATAATTCATTCACCAATCTGAAACTATCAGATATAACTCTTGATAATGAAATACAATCTTA
TCAACAACTGATTCAAGAGGTTGTTGGTGAATTTGCTGAGGCAATGAGGCAAGGGGCTAAGTTTCCACCAGTGGTTGTTT
TTTTTGATGGCGATAATTACTGGTTAGCGGATGGATTGCATCGATTTCTGGCTAAGCAGTTTGTAGCTGAACAAAGTATT
TCGACTGAGGTGCAGCCTGGTTCTCGTTACGATGCAAATTTTTACTCAGCACGTTCCAATTTGAATCCTAGTGATATACA
TAGCAGTGAAGAAAAACACAGATTTTTTGAGAACATCTTGTATGATGGCCAAAGTGAGCCTCTACAATACTTGGACCAAT
CACCAAATCGCTCTAGAAGGAAGAGAGGACAGACTATTGCAACAAATATACGGACACTTTAG

Upstream 100 bases:

>100_bases
TCAATGAGTTATACAGCTTTAGAATTCATCAATCAGGAGATTAAGGCCCTGCATGCTTCAGTCTTCAACTTATATCTTTT
TGTATTAGGAGTTTAAATTA

Downstream 100 bases:

>100_bases
CTAACATATCTTAATAAAAGACTTGTAATTCTCTCAATTGTCTATTGCCAGGAAGGTTTAGATGTTTAGATAGCGATATA
TTGTTGTCTACCACTAGCTC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 153; Mature: 152

Protein sequence:

>153_residues
MSYSKVDNSFTNLKLSDITLDNEIQSYQQLIQEVVGEFAEAMRQGAKFPPVVVFFDGDNYWLADGLHRFLAKQFVAEQSI
STEVQPGSRYDANFYSARSNLNPSDIHSSEEKHRFFENILYDGQSEPLQYLDQSPNRSRRKRGQTIATNIRTL

Sequences:

>Translated_153_residues
MSYSKVDNSFTNLKLSDITLDNEIQSYQQLIQEVVGEFAEAMRQGAKFPPVVVFFDGDNYWLADGLHRFLAKQFVAEQSI
STEVQPGSRYDANFYSARSNLNPSDIHSSEEKHRFFENILYDGQSEPLQYLDQSPNRSRRKRGQTIATNIRTL
>Mature_152_residues
SYSKVDNSFTNLKLSDITLDNEIQSYQQLIQEVVGEFAEAMRQGAKFPPVVVFFDGDNYWLADGLHRFLAKQFVAEQSIS
TEVQPGSRYDANFYSARSNLNPSDIHSSEEKHRFFENILYDGQSEPLQYLDQSPNRSRRKRGQTIATNIRTL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17622; Mature: 17490

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYSKVDNSFTNLKLSDITLDNEIQSYQQLIQEVVGEFAEAMRQGAKFPPVVVFFDGDNY
CCCCHHCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCE
WLADGLHRFLAKQFVAEQSISTEVQPGSRYDANFYSARSNLNPSDIHSSEEKHRFFENIL
EHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCHHHCCCCHHHHHHHHHHH
YDGQSEPLQYLDQSPNRSRRKRGQTIATNIRTL
CCCCCCHHHHHCCCCCHHHHHCCCHHHHHCCCC
>Mature Secondary Structure 
SYSKVDNSFTNLKLSDITLDNEIQSYQQLIQEVVGEFAEAMRQGAKFPPVVVFFDGDNY
CCCHHCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCE
WLADGLHRFLAKQFVAEQSISTEVQPGSRYDANFYSARSNLNPSDIHSSEEKHRFFENIL
EHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCHHHCCCCHHHHHHHHHHH
YDGQSEPLQYLDQSPNRSRRKRGQTIATNIRTL
CCCCCCHHHHHCCCCCHHHHHCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA