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The map label for this gene is yebA [H]

Identifier: 158340483

GI number: 158340483

Start: 27088

End: 28317

Strand: Reverse

Name: yebA [H]

Synonym: AM1_C0028

Alternate gene names: 158340483

Gene position: 28317-27088 (Counterclockwise)

Preceding gene: 158340484

Following gene: 158340482

Centisome position: 10.37

GC content: 49.35

Gene sequence:

>1230_bases
TTGCAAGCTAAGGCAGAAGCTGAGGGTGTAGACCTTCAACCCATTGATGGGTCAACAGGTGCGCCGCAATTGAAGGGTAT
ACCAGGTCAGCCAGGTTCTGATGCCGCTAAGTCTAAGTTCGCTTCAGCGAGTGGTCAAAGCACTGGAACGCAAGGGACAA
AGGCCCAAACTATTGGCAAGTCTGCTTGGGGAAGCGAAACAGATGTTCACAACCTAATTTTGACATCAGCATTGGAAAGC
ACTGGGACACAAAATCAAATTGATGTCGCTGTGGCAATCATGAACCGGGTTGTTTCTCCCAAGCACCCAAATACAATTAC
GGATGTGGTGTTCCAGCCGAAGCAATATGAACCTAACTTTGGTCAAGCCCCGGTAACTTCCAAAGAAGAAGCCATCAGCC
GTATTGCTAGAAAAACCCGTAGCATCCAAAGTGCTATCTCAACTTACGAAACCATCGAAAAAGCACTTAACGATCCGAAT
GCTATTGCGGCCTCACAAGCTTTTCTCAAAGGTGCGACTGACTTTAGAGGTCAGGATTGGTTGCACATTCGCCAACCGGG
TGATCCCTATCGGGGGAATACCGGGGCAAACTTCTATTTTCAGGAGTCACAGGATCCAGCTATCGCAGCGGCAACGTTAG
GAGTGTTGGGCGTTGAGAGTACAGCGGTTGATCCAAACAGCATTTATGCGTCCGCCTCGGGCCATTCCATCCCTTGTAGG
CCCGGTGCGATTGCAAGTGCAGGGACTGTGCCTTTTCAGCAAGGATCAGGAGTCGCAACAGGAAGGCTCGCCGATCCATT
GGGGAGTCATAATTACAAGCTGACCAGTAACTACGGCCCACGGGTAAATCCTGTTACAGGCGTTCCGGGCTTTCACTATG
GTATTGATCTGGCTCATTTTGCAGGAACTCCTTTCGCGGCTGCTGATGGTGGCGTGGTCGTTGAGAGCTTTTGGAATGGG
GACTACGGTAACTGGATTCTGATTGACCACGGTAACGGCTTAGCCACTTGGTACGCACACAATAAGGTTAATTACGTTAA
AGCGGGGGATACTGTAGATCCGGGGCAGTTAATTGGCGAAGTCGGAAGTACAGGCAATTCAACAGGTCCTCATATTGACT
TAGGCGTAATTGAGGGGTATGTCACAGGGAATCGTGACTCAGGAACTGTCGTAAACCCAAGAAAATATTTCAATCTCCCC
CCAGTAGGAACCTTCAATCAACCTCAATAA

Upstream 100 bases:

>100_bases
AGCGTTGACGGCAGCGGGCCTGAGTCAAGTGTACTGCGACCCCAATCAGATTATTGCTAGTACAGGGCAAAGTGATACTA
AGCAGGGAGATATCAGTGAC

Downstream 100 bases:

>100_bases
GGAACAACACATGAAAAAACATTTACAGTTATTAATTCTAACGAGCTTGGTCTCAGCCCTGCCTGCCAAGGCTAATCCTG
TTGCCGATGCGTGCTTTAAC

Product: M23 peptidase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 409; Mature: 409

Protein sequence:

>409_residues
MQAKAEAEGVDLQPIDGSTGAPQLKGIPGQPGSDAAKSKFASASGQSTGTQGTKAQTIGKSAWGSETDVHNLILTSALES
TGTQNQIDVAVAIMNRVVSPKHPNTITDVVFQPKQYEPNFGQAPVTSKEEAISRIARKTRSIQSAISTYETIEKALNDPN
AIAASQAFLKGATDFRGQDWLHIRQPGDPYRGNTGANFYFQESQDPAIAAATLGVLGVESTAVDPNSIYASASGHSIPCR
PGAIASAGTVPFQQGSGVATGRLADPLGSHNYKLTSNYGPRVNPVTGVPGFHYGIDLAHFAGTPFAAADGGVVVESFWNG
DYGNWILIDHGNGLATWYAHNKVNYVKAGDTVDPGQLIGEVGSTGNSTGPHIDLGVIEGYVTGNRDSGTVVNPRKYFNLP
PVGTFNQPQ

Sequences:

>Translated_409_residues
MQAKAEAEGVDLQPIDGSTGAPQLKGIPGQPGSDAAKSKFASASGQSTGTQGTKAQTIGKSAWGSETDVHNLILTSALES
TGTQNQIDVAVAIMNRVVSPKHPNTITDVVFQPKQYEPNFGQAPVTSKEEAISRIARKTRSIQSAISTYETIEKALNDPN
AIAASQAFLKGATDFRGQDWLHIRQPGDPYRGNTGANFYFQESQDPAIAAATLGVLGVESTAVDPNSIYASASGHSIPCR
PGAIASAGTVPFQQGSGVATGRLADPLGSHNYKLTSNYGPRVNPVTGVPGFHYGIDLAHFAGTPFAAADGGVVVESFWNG
DYGNWILIDHGNGLATWYAHNKVNYVKAGDTVDPGQLIGEVGSTGNSTGPHIDLGVIEGYVTGNRDSGTVVNPRKYFNLP
PVGTFNQPQ
>Mature_409_residues
MQAKAEAEGVDLQPIDGSTGAPQLKGIPGQPGSDAAKSKFASASGQSTGTQGTKAQTIGKSAWGSETDVHNLILTSALES
TGTQNQIDVAVAIMNRVVSPKHPNTITDVVFQPKQYEPNFGQAPVTSKEEAISRIARKTRSIQSAISTYETIEKALNDPN
AIAASQAFLKGATDFRGQDWLHIRQPGDPYRGNTGANFYFQESQDPAIAAATLGVLGVESTAVDPNSIYASASGHSIPCR
PGAIASAGTVPFQQGSGVATGRLADPLGSHNYKLTSNYGPRVNPVTGVPGFHYGIDLAHFAGTPFAAADGGVVVESFWNG
DYGNWILIDHGNGLATWYAHNKVNYVKAGDTVDPGQLIGEVGSTGNSTGPHIDLGVIEGYVTGNRDSGTVVNPRKYFNLP
PVGTFNQPQ

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=125, Percent_Identity=38.4, Blast_Score=79, Evalue=8e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 42806; Mature: 42806

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAKAEAEGVDLQPIDGSTGAPQLKGIPGQPGSDAAKSKFASASGQSTGTQGTKAQTIGK
CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHCCC
SAWGSETDVHNLILTSALESTGTQNQIDVAVAIMNRVVSPKHPNTITDVVFQPKQYEPNF
CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHEECCCCCCCCC
GQAPVTSKEEAISRIARKTRSIQSAISTYETIEKALNDPNAIAASQAFLKGATDFRGQDW
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCE
LHIRQPGDPYRGNTGANFYFQESQDPAIAAATLGVLGVESTAVDPNSIYASASGHSIPCR
EEECCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHEECCCCCCCCCCEEECCCCCCCCCC
PGAIASAGTVPFQQGSGVATGRLADPLGSHNYKLTSNYGPRVNPVTGVPGFHYGIDLAHF
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHCEEHHHH
AGTPFAAADGGVVVESFWNGDYGNWILIDHGNGLATWYAHNKVNYVKAGDTVDPGQLIGE
CCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCEEEEEECCCEEEEECCCCCCHHHHHHH
VGSTGNSTGPHIDLGVIEGYVTGNRDSGTVVNPRKYFNLPPVGTFNQPQ
HCCCCCCCCCEEEEEEEEEEEECCCCCCCEECHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MQAKAEAEGVDLQPIDGSTGAPQLKGIPGQPGSDAAKSKFASASGQSTGTQGTKAQTIGK
CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHCCC
SAWGSETDVHNLILTSALESTGTQNQIDVAVAIMNRVVSPKHPNTITDVVFQPKQYEPNF
CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHEECCCCCCCCC
GQAPVTSKEEAISRIARKTRSIQSAISTYETIEKALNDPNAIAASQAFLKGATDFRGQDW
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCE
LHIRQPGDPYRGNTGANFYFQESQDPAIAAATLGVLGVESTAVDPNSIYASASGHSIPCR
EEECCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHEECCCCCCCCCCEEECCCCCCCCCC
PGAIASAGTVPFQQGSGVATGRLADPLGSHNYKLTSNYGPRVNPVTGVPGFHYGIDLAHF
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHCEEHHHH
AGTPFAAADGGVVVESFWNGDYGNWILIDHGNGLATWYAHNKVNYVKAGDTVDPGQLIGE
CCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCEEEEEECCCEEEEECCCCCCHHHHHHH
VGSTGNSTGPHIDLGVIEGYVTGNRDSGTVVNPRKYFNLPPVGTFNQPQ
HCCCCCCCCCEEEEEEEEEEEECCCCCCCEECHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]