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The map label for this gene is traD [C]

Identifier: 158340454

GI number: 158340454

Start: 270858

End: 272582

Strand: Reverse

Name: traD [C]

Synonym: AM1_C0382

Alternate gene names: 158340454

Gene position: 272582-270858 (Counterclockwise)

Preceding gene: NA

Following gene: 158340453

Centisome position: 99.8

GC content: 52.58

Gene sequence:

>1725_bases
ATGCAGCACAAAACCGAACAGCCTCCCCAGCCCCAATCTGAAGGAGTTGACCTGTCTCCCCTATTCAGTGGCCCTCTCCC
CTGGTTGACGGGCTTATTGGCTCTCATCCTGATTGCCCTGTGGTGGTTTGAGGATGAGACGAGACGTGAACCCGATGATG
CCCGGTGGGCCACGAGACGGGAACAGCATCGAGCTAAGATGCTGGGACTCAAGCAGATCAGAGACCGAAAACGGGATGAG
ATTGCCCTGCGCTTGGGTAGCGATGACCCCCTGATCCTCCCCGACCTCCAACCCCTCGTCACCATCGTAGGCGGCTCTGG
TAAGGGCAAGACCAAACTAATTGAGCTAGCTTTAGCAGATGCCATTCTTCAAGAGCACACTCTGATTGTCTTTGATGTCA
AAGGCACCCTCAAGAAGATATTCATCCCCTATGCCCGCAAGCAAAAAATTCCTTATGAGTGCTACTGCTTTGCTCCGGGC
AAGCCCTATAGTCATGGCTTTGACTACCTGGGATTTATGCGGGATGCGGATGACTCCCTGATTGCCCGGTCCATCGCCTC
AACCTTGTCCGATAACGTGATTGTCAATATGTCGAACAAGCATCCTTTCTTCGACAATCACGCCGAGTACCTTCTACAAG
CATTGCTGATGATGGCAAAGCGGGCAGACTATGCGGACTTGCCGATGGTCTGGGCCTTGATGGGCCTGCCGGGCATCGCC
GAGCGGATTCAGTTGGCGGACCAAGAAGGGGCATTCAAAGTAGATAGCGATTTGGGCATGTGGGTGAGGCAACAGCTCGT
GGGCCTGATGAGCGTGACGGGCACCCAAGATACTGCTGGTGGCATATTAGCGAGTGGCATCAACTATCTCTTACCAATGG
TCAATCGGCAGACCATCCCCTGTCTGTCCATCGATGGGCGCGAACCCACCCAATCCACCATTCCTTTGGACCTACCGGGT
AAGCAAATCATCTTCTTTGAGTTGGATGGACAAGCCAAGAAAGCCACGGCCCCCCTCGTCGCAGTTGCTATTCACCTACT
GATTCAGCGCAACCTGAATGAGGATACAGAACGGGATCGGCCCTTTGGTGTGTTCCTAGATGAATTCGCCCGATTGATGC
TGCCGAGCTTTGAAGAAGTGGTGTCCTTGGATCGGAGCTATGGGTTCTATTCCTTTGTGTCCATGCAGAGCTATAGCCAA
CCCAAGATTAAATATCAGTCTGAGACCTCAGAGTCGATCTTTGATAACACCTCCACCCAATTCATATTCAAGAGTGGGAG
CTACAAAGTCCGAGAAGACCTGAGTGCGGACTTGGGGGAATACACCAAGCACTACCATTCCAAATCTCGCAGCTACGGGA
AGATGGGCAACAGCCGCTCCCGCAATGAACAGGAGAAGAAGAAGCGGTTGATTACCGCTTCAGATATCAAGCGATTGAAG
AAAGGGGAATTTATCTGCACCAACCCCGGCATGGATGATCGGCCCATTCGGATGCGCTTCAACTTGAAGAAGCGGAATGG
CACGGACATGCAGCGGTTCACCGAATGTGAGCGGATGTACAACAGCCATGTCCATAGGCAGATGGAGAGGATAGCCCAAG
AGCGGGTGTTAGATTCTCCAGAACAAATCATGTCCGACCGCATGGTGTCTGCGGATGCTTTGCTGCCCTCTACCCAAGAA
GTTGAATCCCACAAATTGAAGCAACAGGAGGAACAAGCCGCATGA

Upstream 100 bases:

>100_bases
TGCAGTTGGGTTACTCCAGCCAACAAACCTATTGCTGTGACCACTACTTTAGACACAACGACAGATTCATCCCCATCGCT
AAAAACAAAGGTGGTGAATG

Downstream 100 bases:

>100_bases
GTAGCGAAGAACAGCAATTTAGAGAAGCGTTGCAAATCGGCCAGCAGGCCGTGAATGCGACCAACAGCGTCATCATCAAT
GCCGTCGCCCTCCGCAAGCC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 574; Mature: 574

Protein sequence:

>574_residues
MQHKTEQPPQPQSEGVDLSPLFSGPLPWLTGLLALILIALWWFEDETRREPDDARWATRREQHRAKMLGLKQIRDRKRDE
IALRLGSDDPLILPDLQPLVTIVGGSGKGKTKLIELALADAILQEHTLIVFDVKGTLKKIFIPYARKQKIPYECYCFAPG
KPYSHGFDYLGFMRDADDSLIARSIASTLSDNVIVNMSNKHPFFDNHAEYLLQALLMMAKRADYADLPMVWALMGLPGIA
ERIQLADQEGAFKVDSDLGMWVRQQLVGLMSVTGTQDTAGGILASGINYLLPMVNRQTIPCLSIDGREPTQSTIPLDLPG
KQIIFFELDGQAKKATAPLVAVAIHLLIQRNLNEDTERDRPFGVFLDEFARLMLPSFEEVVSLDRSYGFYSFVSMQSYSQ
PKIKYQSETSESIFDNTSTQFIFKSGSYKVREDLSADLGEYTKHYHSKSRSYGKMGNSRSRNEQEKKKRLITASDIKRLK
KGEFICTNPGMDDRPIRMRFNLKKRNGTDMQRFTECERMYNSHVHRQMERIAQERVLDSPEQIMSDRMVSADALLPSTQE
VESHKLKQQEEQAA

Sequences:

>Translated_574_residues
MQHKTEQPPQPQSEGVDLSPLFSGPLPWLTGLLALILIALWWFEDETRREPDDARWATRREQHRAKMLGLKQIRDRKRDE
IALRLGSDDPLILPDLQPLVTIVGGSGKGKTKLIELALADAILQEHTLIVFDVKGTLKKIFIPYARKQKIPYECYCFAPG
KPYSHGFDYLGFMRDADDSLIARSIASTLSDNVIVNMSNKHPFFDNHAEYLLQALLMMAKRADYADLPMVWALMGLPGIA
ERIQLADQEGAFKVDSDLGMWVRQQLVGLMSVTGTQDTAGGILASGINYLLPMVNRQTIPCLSIDGREPTQSTIPLDLPG
KQIIFFELDGQAKKATAPLVAVAIHLLIQRNLNEDTERDRPFGVFLDEFARLMLPSFEEVVSLDRSYGFYSFVSMQSYSQ
PKIKYQSETSESIFDNTSTQFIFKSGSYKVREDLSADLGEYTKHYHSKSRSYGKMGNSRSRNEQEKKKRLITASDIKRLK
KGEFICTNPGMDDRPIRMRFNLKKRNGTDMQRFTECERMYNSHVHRQMERIAQERVLDSPEQIMSDRMVSADALLPSTQE
VESHKLKQQEEQAA
>Mature_574_residues
MQHKTEQPPQPQSEGVDLSPLFSGPLPWLTGLLALILIALWWFEDETRREPDDARWATRREQHRAKMLGLKQIRDRKRDE
IALRLGSDDPLILPDLQPLVTIVGGSGKGKTKLIELALADAILQEHTLIVFDVKGTLKKIFIPYARKQKIPYECYCFAPG
KPYSHGFDYLGFMRDADDSLIARSIASTLSDNVIVNMSNKHPFFDNHAEYLLQALLMMAKRADYADLPMVWALMGLPGIA
ERIQLADQEGAFKVDSDLGMWVRQQLVGLMSVTGTQDTAGGILASGINYLLPMVNRQTIPCLSIDGREPTQSTIPLDLPG
KQIIFFELDGQAKKATAPLVAVAIHLLIQRNLNEDTERDRPFGVFLDEFARLMLPSFEEVVSLDRSYGFYSFVSMQSYSQ
PKIKYQSETSESIFDNTSTQFIFKSGSYKVREDLSADLGEYTKHYHSKSRSYGKMGNSRSRNEQEKKKRLITASDIKRLK
KGEFICTNPGMDDRPIRMRFNLKKRNGTDMQRFTECERMYNSHVHRQMERIAQERVLDSPEQIMSDRMVSADALLPSTQE
VESHKLKQQEEQAA

Specific function: Trad Is A Cell Envelope Protein. The Function Of Trad Is Unknown But It Is Essential For DNA Transfer. It May Form Or May Be Part Of A Non-Specific Pore For DNA Export, Or It May Directly Energizes DNA Transport. [C]

COG id: COG3505

COG function: function code U; Type IV secretory pathway, VirD4 components

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 65339; Mature: 65339

Theoretical pI: Translated: 7.37; Mature: 7.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQHKTEQPPQPQSEGVDLSPLFSGPLPWLTGLLALILIALWWFEDETRREPDDARWATRR
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHCCCCCHHHHHHHH
EQHRAKMLGLKQIRDRKRDEIALRLGSDDPLILPDLQPLVTIVGGSGKGKTKLIELALAD
HHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCCCEEEEECCCCCCHHHHHHHHHHH
AILQEHTLIVFDVKGTLKKIFIPYARKQKIPYECYCFAPGKPYSHGFDYLGFMRDADDSL
HHHHCCCEEEEECCHHHHHHHCCHHHCCCCCEEEEEECCCCCCCCCCHHHHHHCCCCHHH
IARSIASTLSDNVIVNMSNKHPFFDNHAEYLLQALLMMAKRADYADLPMVWALMGLPGIA
HHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHH
ERIQLADQEGAFKVDSDLGMWVRQQLVGLMSVTGTQDTAGGILASGINYLLPMVNRQTIP
HHHHHCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCC
CLSIDGREPTQSTIPLDLPGKQIIFFELDGQAKKATAPLVAVAIHLLIQRNLNEDTERDR
EEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCHHCCC
PFGVFLDEFARLMLPSFEEVVSLDRSYGFYSFVSMQSYSQPKIKYQSETSESIFDNTSTQ
CCHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCCCEEECCCCHHHHHCCCCCE
FIFKSGSYKVREDLSADLGEYTKHYHSKSRSYGKMGNSRSRNEQEKKKRLITASDIKRLK
EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHHHHHH
KGEFICTNPGMDDRPIRMRFNLKKRNGTDMQRFTECERMYNSHVHRQMERIAQERVLDSP
CCCEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
EQIMSDRMVSADALLPSTQEVESHKLKQQEEQAA
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQHKTEQPPQPQSEGVDLSPLFSGPLPWLTGLLALILIALWWFEDETRREPDDARWATRR
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHCCCCCHHHHHHHH
EQHRAKMLGLKQIRDRKRDEIALRLGSDDPLILPDLQPLVTIVGGSGKGKTKLIELALAD
HHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCCCEEEEECCCCCCHHHHHHHHHHH
AILQEHTLIVFDVKGTLKKIFIPYARKQKIPYECYCFAPGKPYSHGFDYLGFMRDADDSL
HHHHCCCEEEEECCHHHHHHHCCHHHCCCCCEEEEEECCCCCCCCCCHHHHHHCCCCHHH
IARSIASTLSDNVIVNMSNKHPFFDNHAEYLLQALLMMAKRADYADLPMVWALMGLPGIA
HHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHH
ERIQLADQEGAFKVDSDLGMWVRQQLVGLMSVTGTQDTAGGILASGINYLLPMVNRQTIP
HHHHHCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCC
CLSIDGREPTQSTIPLDLPGKQIIFFELDGQAKKATAPLVAVAIHLLIQRNLNEDTERDR
EEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCHHCCC
PFGVFLDEFARLMLPSFEEVVSLDRSYGFYSFVSMQSYSQPKIKYQSETSESIFDNTSTQ
CCHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCCCEEECCCCHHHHHCCCCCE
FIFKSGSYKVREDLSADLGEYTKHYHSKSRSYGKMGNSRSRNEQEKKKRLITASDIKRLK
EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHHHHHH
KGEFICTNPGMDDRPIRMRFNLKKRNGTDMQRFTECERMYNSHVHRQMERIAQERVLDSP
CCCEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
EQIMSDRMVSADALLPSTQEVESHKLKQQEEQAA
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA