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The map label for this gene is yjcF [C]

Identifier: 158340412

GI number: 158340412

Start: 236125

End: 236832

Strand: Reverse

Name: yjcF [C]

Synonym: AM1_C0340

Alternate gene names: 158340412

Gene position: 236832-236125 (Counterclockwise)

Preceding gene: 158340413

Following gene: 158340408

Centisome position: 86.71

GC content: 46.19

Gene sequence:

>708_bases
ATGGCTAATCAGGAACAGATAGCCTTGCTGAGTCAGGGTGTTGAAGTTTGGAATGAGTGGAGAAAGGAAAATCTCAAGGT
ATCGATTAACCTCAGCAAGGCCAGCCTGACTGGGATGGATCTACATGGGGCTAACTTTGATAAAGCGATCATGATCGGGG
CTAATCTCACGGGTGCTAATCTCAGTCAGGCCAGCCTTTGTGAAGTCAGCCTCTGGAAAGCCAATCTTCGTGGTGCCATT
TTAAGTAAAGCGAACCTTAAAGACGCCAACCTCATTGAGGCTGACTTGTGTACGGCTAGTCTCTGGAAAGCCAATCTCTA
TAACGTCAACCTCTATAAAGCCGATCTCCGTGGTGCCAACCTTTGTAGAGCCTATCTTTACAAAGCCAATCTCAGTGAGA
CAGACCTCAGTCAGGCGAGCCTTTGTGAAGTCTACCTATGTGAAGCTAATCTCTATGAAGCGGATCTTTCTGGTGCGGAT
CTTGAAGGAGCTAATTTTGAGGGAGCAGACCTTCTCAACATCCGTTTTGATCTTGAAACGAATTGGTCATCAATTGGTAG
TTGGGACAATGCTAGAGATATACCGCAGAAGTGGAAGGATGAGAGCAGCCAAAGAAGTGGAACTCAGCAAGGTTTTGATG
GATCGATGGTTTCAGATGGCGGTTCTGATGTTGCTTTAGATCCAAGACTCTTGACTGACTCTTTGTGA

Upstream 100 bases:

>100_bases
GGGATTTCAAGCTCATGTTTGTTTTCCAGAATTTCCCGAAAGCATTGCTATCATGCATGGGATAAGAAAATTGACTTCAG
AGCATTCTTGAGAACTAACG

Downstream 100 bases:

>100_bases
TTGTAGTTGTGTGCTGTCCATCCCTAAGATCATCTATGGGGTGGGGGATTTGGCTGCACAACTTGTGAGGCTTTGGTGCA
AGCTCCCCCTCTAGATAGCT

Product: pentapeptide repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 234

Protein sequence:

>235_residues
MANQEQIALLSQGVEVWNEWRKENLKVSINLSKASLTGMDLHGANFDKAIMIGANLTGANLSQASLCEVSLWKANLRGAI
LSKANLKDANLIEADLCTASLWKANLYNVNLYKADLRGANLCRAYLYKANLSETDLSQASLCEVYLCEANLYEADLSGAD
LEGANFEGADLLNIRFDLETNWSSIGSWDNARDIPQKWKDESSQRSGTQQGFDGSMVSDGGSDVALDPRLLTDSL

Sequences:

>Translated_235_residues
MANQEQIALLSQGVEVWNEWRKENLKVSINLSKASLTGMDLHGANFDKAIMIGANLTGANLSQASLCEVSLWKANLRGAI
LSKANLKDANLIEADLCTASLWKANLYNVNLYKADLRGANLCRAYLYKANLSETDLSQASLCEVYLCEANLYEADLSGAD
LEGANFEGADLLNIRFDLETNWSSIGSWDNARDIPQKWKDESSQRSGTQQGFDGSMVSDGGSDVALDPRLLTDSL
>Mature_234_residues
ANQEQIALLSQGVEVWNEWRKENLKVSINLSKASLTGMDLHGANFDKAIMIGANLTGANLSQASLCEVSLWKANLRGAIL
SKANLKDANLIEADLCTASLWKANLYNVNLYKADLRGANLCRAYLYKANLSETDLSQASLCEVYLCEANLYEADLSGADL
EGANFEGADLLNIRFDLETNWSSIGSWDNARDIPQKWKDESSQRSGTQQGFDGSMVSDGGSDVALDPRLLTDSL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 5 pentapeptide repeat domains [H]

Homologues:

Organism=Homo sapiens, GI39753959, Length=143, Percent_Identity=34.965034965035, Blast_Score=68, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 25678; Mature: 25547

Theoretical pI: Translated: 4.28; Mature: 4.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANQEQIALLSQGVEVWNEWRKENLKVSINLSKASLTGMDLHGANFDKAIMIGANLTGAN
CCCHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCEECEEEECCCCCCCEEEEECCCCCCC
LSQASLCEVSLWKANLRGAILSKANLKDANLIEADLCTASLWKANLYNVNLYKADLRGAN
CCCCHHHEEEEEHHCCCEEEEECCCCCCCCEEHHHHHHHHHHCCEEEEEEEEEECCCCHH
LCRAYLYKANLSETDLSQASLCEVYLCEANLYEADLSGADLEGANFEGADLLNIRFDLET
HHHHHHEECCCCCCCCCHHHEEEEEEECCCEEECCCCCCCCCCCCCCCCEEEEEEEEECC
NWSSIGSWDNARDIPQKWKDESSQRSGTQQGFDGSMVSDGGSDVALDPRLLTDSL
CCHHCCCCCCCCCCCHHHHCCHHHCCCCCCCCCCCEECCCCCCEEECCCHHCCCC
>Mature Secondary Structure 
ANQEQIALLSQGVEVWNEWRKENLKVSINLSKASLTGMDLHGANFDKAIMIGANLTGAN
CCHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCEECEEEECCCCCCCEEEEECCCCCCC
LSQASLCEVSLWKANLRGAILSKANLKDANLIEADLCTASLWKANLYNVNLYKADLRGAN
CCCCHHHEEEEEHHCCCEEEEECCCCCCCCEEHHHHHHHHHHCCEEEEEEEEEECCCCHH
LCRAYLYKANLSETDLSQASLCEVYLCEANLYEADLSGADLEGANFEGADLLNIRFDLET
HHHHHHEECCCCCCCCCHHHEEEEEEECCCEEECCCCCCCCCCCCCCCCEEEEEEEEECC
NWSSIGSWDNARDIPQKWKDESSQRSGTQQGFDGSMVSDGGSDVALDPRLLTDSL
CCHHCCCCCCCCCCCHHHHCCHHHCCCCCCCCCCCEECCCCCCEEECCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA