Definition Acaryochloris marina MBIC11017 plasmid pREB3, complete sequence.
Accession NC_009928
Length 273,121

Click here to switch to the map view.

The map label for this gene is 158340409

Identifier: 158340409

GI number: 158340409

Start: 234115

End: 234504

Strand: Direct

Name: 158340409

Synonym: AM1_C0337

Alternate gene names: NA

Gene position: 234115-234504 (Clockwise)

Preceding gene: 158340407

Following gene: 158340410

Centisome position: 85.72

GC content: 42.82

Gene sequence:

>390_bases
ATGCCGAAGAAAACTAAAAAACAAAGTAAGCCTTTAGCAGGTCAAGCGCTATTGACTAAAGTTAAAGCTCTAAACGATTT
GACTCGGGAAGAAAAAGCCAAAGCTTGTGGTTACTACAAAATCGCTAAAAGTGGCACTGAACGCATTAATGTGATGGCCT
TCCTGAATGCAGTCTTAGATGCAGAAGGAATGGACCTGGATGCACAAGTCAAGCGCAACAAGAAGATGGGAGGACGTCAA
CCCAACTATCGCATCAGCGTACAATCTAACGGCAAGCTATTAGTCAGTAGTGCTTACACCAAGAAAATGGAGCTGCAACC
GGGAGATGAGCTTGAAATTGCATTGGGGCGTAAGCATATTCATTTGAGACTCAAGACTGAAGAAGATTAA

Upstream 100 bases:

>100_bases
AAATTATCTAAAAAATGACCCACCTCCAGAATTCGTCCTACACTCAATAGCAATTAATTTGCTTATCAAACTGGATGAAA
GTAGACAGTGAGGTTTAAAG

Downstream 100 bases:

>100_bases
TCATTGTGAAAAAAGACTCCCCTGTATTCTCTTCTACAGGGGAGTTGAAAAAGCTTTTATAACCTCAGAGGAGTTTATTC
CCGACATCCGCCTATGACCC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 129; Mature: 128

Protein sequence:

>129_residues
MPKKTKKQSKPLAGQALLTKVKALNDLTREEKAKACGYYKIAKSGTERINVMAFLNAVLDAEGMDLDAQVKRNKKMGGRQ
PNYRISVQSNGKLLVSSAYTKKMELQPGDELEIALGRKHIHLRLKTEED

Sequences:

>Translated_129_residues
MPKKTKKQSKPLAGQALLTKVKALNDLTREEKAKACGYYKIAKSGTERINVMAFLNAVLDAEGMDLDAQVKRNKKMGGRQ
PNYRISVQSNGKLLVSSAYTKKMELQPGDELEIALGRKHIHLRLKTEED
>Mature_128_residues
PKKTKKQSKPLAGQALLTKVKALNDLTREEKAKACGYYKIAKSGTERINVMAFLNAVLDAEGMDLDAQVKRNKKMGGRQP
NYRISVQSNGKLLVSSAYTKKMELQPGDELEIALGRKHIHLRLKTEED

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14428; Mature: 14297

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKKTKKQSKPLAGQALLTKVKALNDLTREEKAKACGYYKIAKSGTERINVMAFLNAVLD
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHC
AEGMDLDAQVKRNKKMGGRQPNYRISVQSNGKLLVSSAYTKKMELQPGDELEIALGRKHI
CCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCEEEEECCCEEEECCCCCCEEEEECCEEE
HLRLKTEED
EEEEEECCC
>Mature Secondary Structure 
PKKTKKQSKPLAGQALLTKVKALNDLTREEKAKACGYYKIAKSGTERINVMAFLNAVLD
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHC
AEGMDLDAQVKRNKKMGGRQPNYRISVQSNGKLLVSSAYTKKMELQPGDELEIALGRKHI
CCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCEEEEECCCEEEECCCCCCEEEEECCEEE
HLRLKTEED
EEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA