Definition | Acaryochloris marina MBIC11017 plasmid pREB3, complete sequence. |
---|---|
Accession | NC_009928 |
Length | 273,121 |
Click here to switch to the map view.
The map label for this gene is 158340348
Identifier: 158340348
GI number: 158340348
Start: 196087
End: 196905
Strand: Direct
Name: 158340348
Synonym: AM1_C0273
Alternate gene names: NA
Gene position: 196087-196905 (Clockwise)
Preceding gene: 158340344
Following gene: 158340349
Centisome position: 71.79
GC content: 48.96
Gene sequence:
>819_bases ATGAAGCTAGCCTTTCAAGATGCCCCAGATGGCTTACTCTCTCTCTCTGCCACCAAACTCCTCACTTATAAACGATGTCC CCAGGCGTACAGCTTCAAGTACGAACGGGGTCTAACCTCACCCTCAGCTTTTGGTTCTCCTAAATTTGGTAATGCCCTGC ATGGTGCTCTGGCTGACATCTATCGGGATTGGAACTACGCTTATCCCCTTCCCTCTCTGGATTGGTTTGCCATTTGTTGG CAACAGCATACTGGAGAACTAAGCTCAACTCAAATCCATGAGGGCTGGATGGCCTTGCAGCTCTACTATGAAAGGTATAT GGCTCCTCTCCCCCAGATCCGAAAACCGCTTGGTGTAGAGGGCAAAATCAAGGCTAACTTTCAAGTTAATAACATCGAAT TCTCTCTTGCCGGTCACTATGACCGCCTGGATTACTTTGGGGATGGATTGGAGCTAATCGACTACAAAACGAGCAAAATA GTTAAACCATCGGACGGAATTGATTGGCAGCTCGGACTCTATAACCTCATTCTAGAACAGACCTATCACCAAGCACTTCA GCGCTTGAGCCTAATTTATCTTCGACAGGGCCAGAGAATCACTTATGACGTAACCCCGGAACATCACCGGCAAGTCCGGG AGCTGATCGGGGACTTGGCAGTGAAGCTGAGGATAGATCAGGAGTGGGAGCCAGAAGTGGGAGGACATTGCGTTCGCTGT GGGTATCAAAAATATTGCCCTGCGAAGTCAGAGAAGCTAGAGCCTATACCGGAAGGGGCTAAGGAGGGGCGGCAAATGCA GTTAGTTTTGGGTCTTTAA
Upstream 100 bases:
>100_bases ATTTATAGGCTTGTTTCTATGATCTCCTAAAAAGGTGAACTTCGCTAGAGGGGAAATACCCACAGTACTTTGATCAATGA GATATTGCCCTCGATCTATT
Downstream 100 bases:
>100_bases ATCCCAGAAGTATTTTTGGTATGCAACGATAAAGCTGTTGATAGGACCAATCTGCAGCTTTAATCATTGGGCAGTGGGTT GCTTCAGACAGGCTTTCCTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 272; Mature: 272
Protein sequence:
>272_residues MKLAFQDAPDGLLSLSATKLLTYKRCPQAYSFKYERGLTSPSAFGSPKFGNALHGALADIYRDWNYAYPLPSLDWFAICW QQHTGELSSTQIHEGWMALQLYYERYMAPLPQIRKPLGVEGKIKANFQVNNIEFSLAGHYDRLDYFGDGLELIDYKTSKI VKPSDGIDWQLGLYNLILEQTYHQALQRLSLIYLRQGQRITYDVTPEHHRQVRELIGDLAVKLRIDQEWEPEVGGHCVRC GYQKYCPAKSEKLEPIPEGAKEGRQMQLVLGL
Sequences:
>Translated_272_residues MKLAFQDAPDGLLSLSATKLLTYKRCPQAYSFKYERGLTSPSAFGSPKFGNALHGALADIYRDWNYAYPLPSLDWFAICW QQHTGELSSTQIHEGWMALQLYYERYMAPLPQIRKPLGVEGKIKANFQVNNIEFSLAGHYDRLDYFGDGLELIDYKTSKI VKPSDGIDWQLGLYNLILEQTYHQALQRLSLIYLRQGQRITYDVTPEHHRQVRELIGDLAVKLRIDQEWEPEVGGHCVRC GYQKYCPAKSEKLEPIPEGAKEGRQMQLVLGL >Mature_272_residues MKLAFQDAPDGLLSLSATKLLTYKRCPQAYSFKYERGLTSPSAFGSPKFGNALHGALADIYRDWNYAYPLPSLDWFAICW QQHTGELSSTQIHEGWMALQLYYERYMAPLPQIRKPLGVEGKIKANFQVNNIEFSLAGHYDRLDYFGDGLELIDYKTSKI VKPSDGIDWQLGLYNLILEQTYHQALQRLSLIYLRQGQRITYDVTPEHHRQVRELIGDLAVKLRIDQEWEPEVGGHCVRC GYQKYCPAKSEKLEPIPEGAKEGRQMQLVLGL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31221; Mature: 31221
Theoretical pI: Translated: 7.21; Mature: 7.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLAFQDAPDGLLSLSATKLLTYKRCPQAYSFKYERGLTSPSAFGSPKFGNALHGALADI CCCCCCCCCCHHHHHHHHHHHHHHHCCCHHCCHHHCCCCCCCCCCCCCCCHHHHHHHHHH YRDWNYAYPLPSLDWFAICWQQHTGELSSTQIHEGWMALQLYYERYMAPLPQIRKPLGVE HHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHCCCCCC GKIKANFQVNNIEFSLAGHYDRLDYFGDGLELIDYKTSKIVKPSDGIDWQLGLYNLILEQ CEEEEEEEEEEEEEEECCCCHHHHHHCCCCEEEEECCCCEECCCCCCCEEHHHHHHHHHH TYHQALQRLSLIYLRQGQRITYDVTPEHHRQVRELIGDLAVKLRIDQEWEPEVGGHCVRC HHHHHHHHHHHHHEECCCEEEEECCCHHHHHHHHHHHHHEEEEEECCCCCCCCCCEEEEC GYQKYCPAKSEKLEPIPEGAKEGRQMQLVLGL CHHHCCCCCCCCCCCCCCCHHCCCEEEEEECC >Mature Secondary Structure MKLAFQDAPDGLLSLSATKLLTYKRCPQAYSFKYERGLTSPSAFGSPKFGNALHGALADI CCCCCCCCCCHHHHHHHHHHHHHHHCCCHHCCHHHCCCCCCCCCCCCCCCHHHHHHHHHH YRDWNYAYPLPSLDWFAICWQQHTGELSSTQIHEGWMALQLYYERYMAPLPQIRKPLGVE HHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHCCCCCC GKIKANFQVNNIEFSLAGHYDRLDYFGDGLELIDYKTSKIVKPSDGIDWQLGLYNLILEQ CEEEEEEEEEEEEEEECCCCHHHHHHCCCCEEEEECCCCEECCCCCCCEEHHHHHHHHHH TYHQALQRLSLIYLRQGQRITYDVTPEHHRQVRELIGDLAVKLRIDQEWEPEVGGHCVRC HHHHHHHHHHHHHEECCCEEEEECCCHHHHHHHHHHHHHEEEEEECCCCCCCCCCEEEEC GYQKYCPAKSEKLEPIPEGAKEGRQMQLVLGL CHHHCCCCCCCCCCCCCCCHHCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA